View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_104 (Length: 249)
Name: NF3582_low_104
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_104 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26691127 - 26690883
Alignment:
| Q |
1 |
gaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26691127 |
gaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
26691028 |
T |
|
| Q |
101 |
ctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactattt |
200 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26691027 |
ctcatgtctttctcttcctcaacacactttagtgcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactattt |
26690928 |
T |
|
| Q |
201 |
gttccaccaaagatttcatttctaataatttccttcatttctctc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26690927 |
gttccaccaaagatttcatttctaataatttccttcttttctctc |
26690883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26732438 - 26732194
Alignment:
| Q |
1 |
gaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732438 |
gaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
26732339 |
T |
|
| Q |
101 |
ctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactattt |
200 |
Q |
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| T |
26732338 |
ctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccgatttaaccatgtcataatttgatcccaatgtagggtctactattt |
26732239 |
T |
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| Q |
201 |
gttccaccaaagatttcatttctaataatttccttcatttctctc |
245 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
26732238 |
gttcaaccaaagatttcatttctaataatttccttcttttctctc |
26732194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26695288 - 26695044
Alignment:
| Q |
1 |
gaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26695288 |
gaaaactaataaccatcaaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggt |
26695189 |
T |
|
| Q |
101 |
ctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactattt |
200 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26695188 |
ctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactattt |
26695089 |
T |
|
| Q |
201 |
gttccaccaaagatttcatttctaataatttccttcatttctctc |
245 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||| |||||||| |
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|
| T |
26695088 |
gttccaccaaagatttcatttctgataaattccttcttttctctc |
26695044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 26674996 - 26675154
Alignment:
| Q |
46 |
tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtg |
145 |
Q |
| |
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|||||||||||||| |||| |||| ||| | |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || |
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| T |
26674996 |
tcaagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc |
26675095 |
T |
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| Q |
146 |
aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttc |
204 |
Q |
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|| |||| ||||| ||| |||||||||||| ||||||||| |||||| ||||||||||| |
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| T |
26675096 |
aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttc |
26675154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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