View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_116 (Length: 242)

Name: NF3582_low_116
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_116
NF3582_low_116
[»] chr8 (17 HSPs)
chr8 (1-226)||(11150984-11151212)
chr8 (4-65)||(13873762-13873823)
chr8 (1-58)||(10029224-10029281)
chr8 (1-83)||(20542449-20542531)
chr8 (1-66)||(3347497-3347562)
chr8 (1-76)||(44648914-44648989)
chr8 (1-59)||(600434-600492)
chr8 (10-82)||(4989766-4989838)
chr8 (4-56)||(41726961-41727013)
chr8 (10-85)||(40607369-40607444)
chr8 (1-83)||(3137462-3137544)
chr8 (1-51)||(31331063-31331113)
chr8 (5-75)||(42361491-42361561)
chr8 (4-69)||(6270133-6270198)
chr8 (10-83)||(10652499-10652572)
chr8 (1-57)||(1342383-1342439)
chr8 (11-51)||(42654659-42654699)
[»] chr2 (19 HSPs)
chr2 (2-83)||(36087406-36087487)
chr2 (4-83)||(4557637-4557716)
chr2 (1-57)||(3689614-3689670)
chr2 (1-69)||(13738376-13738446)
chr2 (34-83)||(1870463-1870512)
chr2 (1-58)||(8580574-8580631)
chr2 (4-57)||(42251672-42251725)
chr2 (44-84)||(12695358-12695398)
chr2 (1-57)||(23453407-23453463)
chr2 (1-56)||(17641236-17641291)
chr2 (8-58)||(42850385-42850435)
chr2 (1-66)||(7932877-7932942)
chr2 (1-74)||(15923728-15923801)
chr2 (1-54)||(18717912-18717965)
chr2 (11-56)||(29525679-29525724)
chr2 (1-92)||(1004734-1004826)
chr2 (4-56)||(7669194-7669246)
chr2 (26-54)||(18243302-18243330)
chr2 (21-57)||(42551958-42551994)
[»] chr3 (15 HSPs)
chr3 (4-59)||(38359112-38359167)
chr3 (1-75)||(42437693-42437767)
chr3 (1-69)||(28709549-28709617)
chr3 (1-76)||(6785770-6785845)
chr3 (11-59)||(15671110-15671158)
chr3 (21-83)||(12373070-12373132)
chr3 (4-54)||(49711009-49711059)
chr3 (11-51)||(43652470-43652510)
chr3 (1-83)||(635674-635756)
chr3 (10-56)||(48252267-48252313)
chr3 (4-54)||(48338878-48338928)
chr3 (1-59)||(55446794-55446852)
chr3 (4-57)||(26613060-26613113)
chr3 (11-75)||(27144071-27144136)
chr3 (11-59)||(44291223-44291271)
[»] chr7 (17 HSPs)
chr7 (1-81)||(31850719-31850799)
chr7 (44-83)||(16957615-16957654)
chr7 (1-83)||(19677057-19677139)
chr7 (3-65)||(25530532-25530594)
chr7 (1-54)||(1554017-1554070)
chr7 (34-83)||(24937926-24937975)
chr7 (2-66)||(16685796-16685860)
chr7 (2-66)||(17660032-17660096)
chr7 (1-56)||(1309720-1309775)
chr7 (4-59)||(34993091-34993146)
chr7 (5-56)||(42888369-42888420)
chr7 (1-75)||(8896575-8896649)
chr7 (1-83)||(12810116-12810198)
chr7 (4-58)||(37928365-37928419)
chr7 (21-82)||(18756945-18757006)
chr7 (11-76)||(39386977-39387042)
chr7 (3-75)||(43118870-43118942)
[»] chr1 (17 HSPs)
chr1 (1-76)||(8001723-8001798)
chr1 (1-59)||(46295864-46295922)
chr1 (11-54)||(50468804-50468848)
chr1 (8-65)||(34347214-34347271)
chr1 (2-54)||(3529434-3529486)
chr1 (44-83)||(14331786-14331825)
chr1 (37-76)||(27160286-27160325)
chr1 (37-75)||(11065844-11065882)
chr1 (11-57)||(18786444-18786490)
chr1 (1-83)||(26829554-26829636)
chr1 (10-76)||(34382609-34382675)
chr1 (4-54)||(47496881-47496931)
chr1 (11-54)||(33827822-33827866)
chr1 (11-54)||(33840099-33840143)
chr1 (3-59)||(39238895-39238951)
chr1 (1-57)||(40699312-40699368)
chr1 (11-75)||(48282868-48282932)
[»] chr4 (20 HSPs)
chr4 (1-65)||(31089503-31089567)
chr4 (2-88)||(52837228-52837314)
chr4 (1-57)||(16341097-16341153)
chr4 (1-64)||(27284134-27284197)
chr4 (34-83)||(2908180-2908229)
chr4 (34-83)||(51099995-51100044)
chr4 (8-56)||(20775141-20775189)
chr4 (27-75)||(38319517-38319565)
chr4 (1-76)||(7437805-7437880)
chr4 (4-83)||(12076397-12076476)
chr4 (1-76)||(31861404-31861479)
chr4 (31-86)||(34236272-34236327)
chr4 (11-54)||(47397677-47397720)
chr4 (4-54)||(22019668-22019718)
chr4 (31-85)||(35808315-35808369)
chr4 (1-74)||(22611875-22611948)
chr4 (4-69)||(37183103-37183168)
chr4 (10-83)||(53145200-53145273)
chr4 (8-56)||(28176844-28176892)
chr4 (1-49)||(37431785-37431833)
[»] chr6 (7 HSPs)
chr6 (1-52)||(5611129-5611180)
chr6 (1-83)||(227397-227479)
chr6 (1-83)||(19320240-19320322)
chr6 (8-83)||(31223253-31223328)
chr6 (10-69)||(32800276-32800335)
chr6 (1-83)||(17453942-17454024)
chr6 (11-83)||(6770906-6770978)
[»] chr5 (12 HSPs)
chr5 (11-56)||(11320197-11320242)
chr5 (8-89)||(34346951-34347032)
chr5 (31-83)||(5471317-5471369)
chr5 (10-75)||(3600181-3600246)
chr5 (1-76)||(11815973-11816048)
chr5 (1-52)||(35579341-35579392)
chr5 (1-75)||(6646350-6646424)
chr5 (8-58)||(22294053-22294103)
chr5 (1-54)||(1920744-1920797)
chr5 (34-83)||(6102923-6102972)
chr5 (1-54)||(30293821-30293874)
chr5 (1-45)||(8405823-8405867)
[»] scaffold0079 (1 HSPs)
scaffold0079 (1-57)||(51708-51764)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-81)||(15337-15417)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-58)||(120731-120788)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11150984 - 11151212
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc-taataatatatac-tt 98  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||    
T  11150984 aagtaacatcttatatttctaagacaaaaattttatttgtagattccttaatcattgccctgagggcaccggttaggaagaccctaataatatatacctt 11151083  T
Q  99 gaaccttatatagtgagaaatgttttgcatctaaacacacaaattcatcagctataaactgaaaagttttgcatctatacttcatttttagctagcta-g 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11151084 gaaccttatatagtgagaaatgttttgcatctaaacacacaaattcatcagctataaactgaaaagttttgcatctatacttcatttttagctagctagg 11151183  T
Q  198 ttttgagttaaactacacaagaacattat 226  Q
    ||| |||||||||||||||||||||||||    
T  11151184 tttagagttaaactacacaagaacattat 11151212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 13873762 - 13873823
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  13873762 taacatcttatatttctaagacaaaaattttatttatagattccttaatcattgccctgagg 13873823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10029224 - 10029281
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||    
T  10029224 aagtaacatcttatatttccaagataaaatttttatttgtagatttcttaaccattgc 10029281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20542449 - 20542531
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||| ||||  ||| || ||||| ||||||||||||||| |||| ||||||||| | |||| ||||||    
T  20542449 aagtaacatcttatatttccaagacgaaatttctatttgtagattccttaaccaatgccctgagggcactgtttagcaagacc 20542531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3347562 - 3347497
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 66  Q
    ||||||||||||||||||  |||| |||| |||||||| |||||| ||||||||||| ||||||||    
T  3347562 aagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccattgtcatgaggg 3347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44648989 - 44648914
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||| ||||||||  |||| |||| || ||||| ||||||||||||||||||||  |||||||| ||||||    
T  44648989 aagtaacattttatattttcaagacaaaatttctatttgtagattccttaaccattgccccgagggcactggttag 44648914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 600434 - 600492
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    ||||||||||||||||||| |||  ||||| ||||||| |||||||||||| |||||||    
T  600434 aagtaacatcttatatttccaagccaaaaaatttatttgtagattccttaatcattgcc 600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 4989766 - 4989838
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagac 82  Q
    |||||||||  |||| |||  |||||||||||| || ||||||||||||||| ||||||| |||||| |||||    
T  4989766 cttatattttcaagacaaattttttatttatagttttcttaaccattgccataagggcacgggttagcaagac 4989838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 41726961 - 41727013
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    |||||| ||||||||| |||| |||| |||||||| |||||||||||||||||    
T  41726961 taacattttatatttccaagacaaaatttttatttgtagattccttaaccatt 41727013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 40607369 - 40607444
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagaccta 85  Q
    ||||||||| |||||||||  || |||||||| ||| ||||||||||||| |||||| || |||||| || |||||    
T  40607369 cttatatttttaagataaattttctatttataaatttcttaaccattgccctgagggtactggttagcaataccta 40607444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3137462 - 3137544
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||| ||||  |||| |||| || ||||| |  ||| ||||||||||||| ||||||||| |||||| ||||||    
T  3137462 aagtaacatcttacattttcaagacaaaatttctatttctgaatttcttaaccattgccctgagggcactggttagcaagacc 3137544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31331063 - 31331113
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaa 51  Q
    ||||||||||||||||||| ||||||||| || ||||| |||| |||||||    
T  31331063 aagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 31331113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 42361561 - 42361491
Alignment:
Q  5 aacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    ||||||||||||||| |||| |||| || |||| |||||||| ||||||||| || ||| | |||||||||    
T  42361561 aacatcttatatttcaaagacaaaatttctattaatagattctttaaccattaccctgaagacaccggtta 42361491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 6270198 - 6270133
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 69  Q
    ||||| |||||||||| |||| |||| ||||| || ||||||||||||| ||||||  ||||||||    
T  6270198 taacaccttatatttccaagacaaaatttttaattgtagattccttaactattgccccgagggcac 6270133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 10652572 - 10652499
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| ||||| |||| || ||||||||||||| ||||  |||||| |||| |||| |||||| ||||||    
T  10652572 cttatatttataagacaaaatttctatttatagattctttaattattgccctgagagcactggttagcaagacc 10652499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1342383 - 1342439
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||||||||||||| ||||||||| || |||||  ||||||  |||||||||    
T  1342383 aagtaacatcttatatttccaagataaaatttctatttgaagattctctaaccattg 1342439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 42654659 - 42654699
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaa 51  Q
    |||||||||||||| |||||||||||| |||||||| ||||    
T  42654659 ttatatttctaagacaaaaattttattgatagattctttaa 42654699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 36087406 - 36087487
Alignment:
Q  2 agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||  ||||| ||||||    
T  36087406 agtaacatcttatatttctaagataaaatttctatttgtagattccttaaccattgccctgagggcactagttagcaagacc 36087487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 4557637 - 4557716
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||| ||||||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||||||||| |||| ||||||    
T  4557637 taacttcttatatttccaagataaaatttctatttgtagattctttaaccattgccctgagggcaccgcttagcaagacc 4557716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3689670 - 3689614
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||||||||||||| ||||||||| || ||||| |||| |||||||||||||    
T  3689670 aagtaacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattg 3689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13738446 - 13738376
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaac--cattgccatgagggcac 69  Q
    ||||||||||||||||||  || | |||| ||||||||||||||||||||||  ||||||||||| |||||    
T  13738446 aagtaacatcttatattttcaaaacaaaatttttatttatagattccttaaccacattgccatgacggcac 13738376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 1870512 - 1870463
Alignment:
Q  34 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  1870512 tatttatagtttccttaaccattgccctgagggcactggttagcaagacc 1870463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8580574 - 8580631
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    ||||||||||||||||||| |||| || |||| |||||||||| || |||||||||||    
T  8580574 aagtaacatcttatatttccaagacaacaattctatttatagaatctttaaccattgc 8580631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 42251672 - 42251725
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    |||||| ||||||||||||||||||  ||||| ||| |||||||||||||||||    
T  42251672 taacatgttatatttctaagataaattttttacttagagattccttaaccattg 42251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 12695358 - 12695398
Alignment:
Q  44 ttccttaaccattgccatgagggcaccggttaggaagacct 84  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  12695358 ttccttaaccattgccctaagggcaccggttaggaagacct 12695398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23453407 - 23453463
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||||||||||||  |||| |||| |||||||| ||||||||||||| ||||    
T  23453407 aagtaacatcttatattttcaagacaaaatttttatttgtagattccttaactattg 23453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17641236 - 17641291
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    ||||||||| ||||||||| || | |||  ||||||||||||||||||||||||||    
T  17641236 aagtaacattttatatttcaaaaacaaagtttttatttatagattccttaaccatt 17641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 42850385 - 42850435
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    |||||||||||  ||||||||| || ||||||||||||| |||||||||||    
T  42850385 atcttatatttacaagataaaatttctatttatagattctttaaccattgc 42850435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7932942 - 7932877
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 66  Q
    |||||| |||||| |||||||| | |||| || ||||| ||||||| |||| ||||||||||||||    
T  7932942 aagtaaaatcttacatttctaaaacaaaatttctatttgtagattctttaatcattgccatgaggg 7932877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15923728 - 15923801
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtt 74  Q
    |||||||||||||  ||||||| | |||| || ||||| ||||||| ||||| |||||| ||||||||| ||||    
T  15923728 aagtaacatcttacgtttctaaaacaaaatttctatttctagattctttaactattgccctgagggcactggtt 15923801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18717912 - 18717965
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||||| ||| |||||| || ||||| || ||||||||||||    
T  18717912 aagtaacatcttatatttttaaaataaaatttctatttgtaaattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 29525679 - 29525724
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    |||||||| | |||||||| ||||||||||||||| ||||||||||    
T  29525679 ttatatttttgagataaaatttttatttatagatttcttaaccatt 29525724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1004826 - 1004734
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaaga-cctaataatat 92  Q
    |||||| || ||||||||  |||| |||| || ||||| ||||||||||||||||| || |||||| || |||||| || | |||||||||||    
T  1004826 aagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccattaccctgagggtactggttagcaaaaccctaataatat 1004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 7669194 - 7669246
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    ||||||||||||||| ||||| |||| |||||||| || ||| ||||||||||    
T  7669194 taacatcttatatttttaagacaaaatttttatttttaaatttcttaaccatt 7669246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 18243330 - 18243302
Alignment:
Q  26 aaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||||||||||||||||    
T  18243330 aaaaattttatttatagattccttaacca 18243302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 42551994 - 42551958
Alignment:
Q  21 aagataaaaattttatttatagattccttaaccattg 57  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  42551994 aagacaaaaattttatttgtagattccttaaccattg 42551958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38359112 - 38359167
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38359112 taacatcttatatttctaagataaaatttttatttatagattccttaaccattgcc 38359167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42437767 - 42437693
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    ||||||||||||||| ||| ||||||||| || ||||| |||| ||||||||||||||| ||||||||| |||||    
T  42437767 aagtaacatcttataattccaagataaaatttctatttgtagaatccttaaccattgccctgagggcactggtta 42437693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28709617 - 28709549
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 69  Q
    ||||||||| ||||||||  ||||||||| || ||||||||||||| |||||||||||| |||||||||    
T  28709617 aagtaacattttatattttcaagataaaatttctatttatagattctttaaccattgccctgagggcac 28709549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6785845 - 6785770
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||| ||||||||  |||| ||||||| ||||| |||| ||||||||||||||| ||||||||| ||||||    
T  6785845 aagtaacattttatattttcaagacaaaaattctatttgtagaatccttaaccattgccctgagggcactggttag 6785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 15671158 - 15671110
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  15671158 ttatatttcgaagacaaaaattttatttatagattccttaaccagtgcc 15671110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 12373070 - 12373132
Alignment:
Q  21 aagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| || ||||| |||||||||||||||||||| |||||| || |||||| ||||||    
T  12373070 aagataaaatttatatttgtagattccttaaccattgccctgagggaactggttagcaagacc 12373132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 49711009 - 49711059
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||| |||||||||||||| | ||||| |||||||||||||||||||||    
T  49711009 taacattttatatttctaagacagaaattctatttatagattccttaacca 49711059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 43652510 - 43652470
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaa 51  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  43652510 ttatatttccaagatagaaattttatttatagattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 635756 - 635674
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||| | |  |||| |||| || ||||| |||||||||||||||||| |||||| |||  |||||| ||||||    
T  635756 aagtaacatcttatttattcaagacaaaatttctatttgtagattccttaaccattgtcatgagagcaatggttagcaagacc 635674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 48252313 - 48252267
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    |||||||||  ||||||||  ||||||||||||||||||||||||||    
T  48252313 cttatattttcaagataaattttttatttatagattccttaaccatt 48252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 48338878 - 48338928
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||| ||||||||| || |||||||| |||| |||||||    
T  48338878 taacatcttatatttccaagataaaatttctatttataaattctttaacca 48338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 55446794 - 55446852
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    ||||||||||||||||||| |||| |||| |||||||| ||||||| |||  |||||||    
T  55446794 aagtaacatcttatatttccaagacaaaatttttatttgtagattctttagtcattgcc 55446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 26613113 - 26613060
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    |||||| |||||||||| ||| ||||  ||||||| ||||||||||||||||||    
T  26613113 taacattttatatttctgagacaaaacatttatttgtagattccttaaccattg 26613060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 27144071 - 27144136
Alignment:
Q  11 ttatatttctaagata-aaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    |||||||||||| | | |||||| |||||||||||| |||||||| ||||  ||||||||||||||    
T  27144071 ttatatttctaatacagaaaattctatttatagatttcttaaccagtgcctcgagggcaccggtta 27144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 44291271 - 44291223
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    ||||||||| |||| | ||||| ||||||||||||||||||||| ||||    
T  44291271 ttatatttccaagacagaaattctatttatagattccttaaccagtgcc 44291223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31850799 - 31850719
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaaga 81  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||  |||||||||||  |||||||||||||||| ||||    
T  31850799 aagtaacatcttatatttctaagacaaaatttttatttatggattttttaaccattgctctgagggcaccggttagcaaga 31850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 16957654 - 16957615
Alignment:
Q  44 ttccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  16957654 ttccttaaccattgccatgagggcaccggttagcaagacc 16957615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19677057 - 19677139
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||  |||| |||| || ||||| | ||||||||||||| |||| ||||||||  |||||| ||||||    
T  19677057 aagtaacatcttatattttcaagacaaaatttctatttgtcgattccttaaccaatgccctgagggcattggttagcaagacc 19677139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 25530594 - 25530532
Alignment:
Q  3 gtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 65  Q
    ||||||| ||||||||||||||||||| || |||||| | |||| ||||||||| ||||||||    
T  25530594 gtaacattttatatttctaagataaaatttctatttaaaaattctttaaccattaccatgagg 25530532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1554070 - 1554017
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||||||||||| || | |||||||| ||||||| |||||||    
T  1554070 aagtaacatcttatatttctaagacaacatttttatttgtagattctttaacca 1554017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 24937926 - 24937975
Alignment:
Q  34 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  24937926 tatttatagtttccttaaccattgccctgagggcactggttagcaagacc 24937975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 16685796 - 16685860
Alignment:
Q  2 agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 66  Q
    |||||||||||||||||| |||| |||| || ||||  ||||||||||||||| |||| ||||||    
T  16685796 agtaacatcttatatttcaaagacaaaacttctattagtagattccttaaccaatgccctgaggg 16685860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 17660032 - 17660096
Alignment:
Q  2 agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 66  Q
    |||||||||||||||||| |||| |||| || ||||  ||||||||||||||| |||| ||||||    
T  17660032 agtaacatcttatatttcaaagacaaaacttctattagtagattccttaaccaatgccctgaggg 17660096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1309775 - 1309720
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    ||||||| | |||||||| |||||||||| || ||||| |||||||||||||||||    
T  1309775 aagtaacgtattatatttttaagataaaatttctatttgtagattccttaaccatt 1309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 34993146 - 34993091
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    |||||||||||||||  |||| |||| || ||||| ||||||||||||||||||||    
T  34993146 taacatcttatattttcaagacaaaatttatatttgtagattccttaaccattgcc 34993091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 42888369 - 42888420
Alignment:
Q  5 aacatcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    ||||||||||||||  ||| |||||| ||||||| |||||||||||||||||    
T  42888369 aacatcttatattttcaagttaaaaaatttatttgtagattccttaaccatt 42888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8896649 - 8896575
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    |||||||||||||||||| ||||| |||| || ||||| ||||||| |||| |||||   ||||||||| |||||    
T  8896649 aagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacattgttgtgagggcactggtta 8896575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12810198 - 12810116
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||| ||||||||||| ||||| |||| ||| |||||||||||| |||| |||| |  ||||| || ||||||| ||||||    
T  12810198 aagtaatatcttatatttttaagacaaaattttcatttatagattcattaatcatttctctgaggacatcggttagcaagacc 12810116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 37928365 - 37928419
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    |||||| ||||||||  ||||||||| || ||||||||||||| |||||||||||    
T  37928365 taacattttatattttcaagataaaatttatatttatagattctttaaccattgc 37928419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 18756945 - 18757006
Alignment:
Q  21 aagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagac 82  Q
    |||| |||| || ||||| |||||||||||| || |||||||||||||| |||||| |||||    
T  18756945 aagacaaaatttctatttgtagattccttaatcaatgccatgagggcactggttagcaagac 18757006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 39386977 - 39387042
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    |||||||| || ||||||  |||||||||||| ||| ||||||||| || |||| |||||||||||    
T  39386977 ttatatttttaggataaattttttatttatagtttctttaaccattaccttgagagcaccggttag 39387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 43118870 - 43118942
Alignment:
Q  3 gtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    ||||||||| ||||||  |||| |||| || ||||| |||||| ||||||||||||| ||  |||||||||||    
T  43118870 gtaacatctcatattttcaagacaaaatttatatttgtagatttcttaaccattgccctggaggcaccggtta 43118942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8001798 - 8001723
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||||||||||||  ||||||||| || ||||| |||||||||||||||||||| ||||||||| ||||||    
T  8001798 aagtaacatcttatattttcaagataaaatttctatttctagattccttaaccattgccctgagggcactggttag 8001723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46295922 - 46295864
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    ||||||||| ||||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  46295922 aagtaacattttatattttcaagataaaatttttatttgtagattccttaaccattgcc 46295864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 50468848 - 50468804
Alignment:
Q  11 ttatatttctaagata-aaaattttatttatagattccttaacca 54  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  50468848 ttatatttctaagatagaaaattttatttatagattccttaacca 50468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 34347271 - 34347214
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 65  Q
    |||||||||||| |||| |||| || ||||||||||||| ||||| ||||||||||||    
T  34347271 atcttatatttccaagacaaaatttatatttatagattctttaactattgccatgagg 34347214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3529434 - 3529486
Alignment:
Q  2 agtaacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||||  ||||||||| || |||||||| ||||||||||||    
T  3529434 agtaacatcttatattttcaagataaaatttctatttatatattccttaacca 3529486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 14331825 - 14331786
Alignment:
Q  44 ttccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  14331825 ttccttaaccattgccctgagggcaccggttagcaagacc 14331786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 27160325 - 27160286
Alignment:
Q  37 ttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  27160325 ttatagattgcttaaccattgccttgagggcaccggttag 27160286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 11065882 - 11065844
Alignment:
Q  37 ttatagattccttaaccattgccatgagggcaccggtta 75  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  11065882 ttatagtttccttaaccattgccttgagggcaccggtta 11065844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 18786490 - 18786444
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||| |||| |||| ||||| |||||||||||||||||||||    
T  18786490 ttatatttccaagacaaaagttttacttatagattccttaaccattg 18786444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26829554 - 26829636
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||| |||| |||| || || || || ||| ||||||||||||| | |||||||  ||||| ||||||    
T  26829554 aagtaacatcttatatttccaagacaaaatttctaattgtaaatttcttaaccattgcccttagggcacttgttagcaagacc 26829636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 34382675 - 34382609
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||| |||||||||  |||||||||||| || ||||| ||||||| | ||||||| ||||||    
T  34382675 cttatatttttaagataaattttttatttatagttttcttaatcattgccttaagggcactggttag 34382609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 47496881 - 47496931
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    ||||| ||||||||| |||||||||| || |||||||| ||||||||||||    
T  47496881 taacaacttatatttttaagataaaatttctatttataaattccttaacca 47496931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 33827866 - 33827822
Alignment:
Q  11 ttatatttctaagata-aaaattttatttatagattccttaacca 54  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||    
T  33827866 ttatatttccaagacagaaaattttatttatagattccttaacca 33827822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 33840099 - 33840143
Alignment:
Q  11 ttatatttctaagata-aaaattttatttatagattccttaacca 54  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||    
T  33840099 ttatatttccaagacagaaaattttatttatagattccttaacca 33840143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 39238895 - 39238951
Alignment:
Q  3 gtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 59  Q
    |||||| |||| |||| ||||| |||| |||||||||| ||||||||||||| ||||    
T  39238895 gtaacaacttacatttttaagagaaaatttttatttatggattccttaaccaatgcc 39238951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40699312 - 40699368
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    |||||| ||||||| |||| |||| ||||| | ||||| ||||||||||||||||||    
T  40699312 aagtaaaatcttatgtttccaagacaaaaaatgtatttgtagattccttaaccattg 40699368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 48282932 - 48282868
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    ||||||||  |||| | ||||| ||||||||||||||||||||| ||||  | ||||||||||||    
T  48282932 ttatattttcaagacagaaattctatttatagattccttaaccagtgccccgggggcaccggtta 48282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31089567 - 31089503
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 65  Q
    |||||||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||| |||||    
T  31089567 aagtaacatcttatattttttagacaaaatttttatttatagattccttaatcattgccctgagg 31089503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 52837314 - 52837228
Alignment:
Q  2 agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacctaata 88  Q
    |||||||| |||||| || ||||||||| || |||||||| ||||||||||||||| | ||| | ||||| |||| |||||||||||    
T  52837314 agtaacattttatatgtccaagataaaatttctatttataaattccttaaccattgtcctgaagacaccgattagcaagacctaata 52837228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16341153 - 16341097
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||| ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  16341153 aagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattg 16341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27284134 - 27284197
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgag 64  Q
    ||||||||||||||||||| |||| |||| || ||| | |||||||||||||||||||| ||||    
T  27284134 aagtaacatcttatatttccaagacaaaatttctatatgtagattccttaaccattgccctgag 27284197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 2908229 - 2908180
Alignment:
Q  34 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| ||||||    
T  2908229 tatttatagtttccttaaccattgccgtgaggacaccggttagtaagacc 2908180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 51100044 - 51099995
Alignment:
Q  34 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||||||||||||||| |||||||||  ||||| ||||||    
T  51100044 tatttatagattccttaaccattgccttgagggcactagttagaaagacc 51099995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 20775141 - 20775189
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    ||||||||||||||||| |||  |||||||||||||||| |||||||||    
T  20775141 atcttatatttctaagacaaattttttatttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 38319565 - 38319517
Alignment:
Q  27 aaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||| ||||    
T  38319565 aaaattctatttatagattccttaaccaatgccatgggggcaccagtta 38319517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7437880 - 7437805
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||||||||||||| |||| | |  |||||||| | || || |||||||||||| |||||||||| |||||    
T  7437880 aagtaacatcttatatttccaagacacattttttatttgtggaatcgttaaccattgccttgagggcaccagttag 7437805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12076476 - 12076397
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||||  |||| |||| ||||||||  |||||||||||||||| || |||||| || | |||| ||||||    
T  12076476 taacatcttatattttcaagacaaaatttttatttgaagattccttaaccattaccttgagggaactgattagcaagacc 12076397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31861479 - 31861404
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||||||||||||| || |||||| |||||| | || ||||||||| || | || ||||||||| ||||||    
T  31861479 aagtaacatcttatatttccaaaataaaatttttatatgtaaattccttaatcaataccctgagggcactggttag 31861404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 34236272 - 34236327
Alignment:
Q  31 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagacctaa 86  Q
    |||||||||||| ||| ||||||||||  |||||||||| |||||| |||||||||    
T  34236272 ttttatttatagtttctttaaccattgttatgagggcactggttagcaagacctaa 34236327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 47397677 - 47397720
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||    
T  47397677 ttatatttctaaaatagaaattctatttatagattccttaacca 47397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 22019668 - 22019718
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||  |||| |||| ||| ||||||||||||||||||||    
T  22019668 taacatcttatattttaaagacaaaattttcatttatagattccttaacca 22019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 35808369 - 35808315
Alignment:
Q  31 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagaccta 85  Q
    |||||||||||| ||||||||||||||   ||||||||| |||||| ||||||||    
T  35808369 ttttatttatagtttccttaaccattgatgtgagggcactggttagcaagaccta 35808315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22611948 - 22611875
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtt 74  Q
    |||||||||||||||||| ||||| |||| || ||||| |||||| ||||| ||||  | ||| ||||||||||    
T  22611948 aagtaacatcttatatttttaagacaaaatttatatttgtagatttcttaatcattatcctgaaggcaccggtt 22611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 37183103 - 37183168
Alignment:
Q  4 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 69  Q
    |||||| |||||||| |||||||| | |||||||| || | ||||||| || ||||||||||||||    
T  37183103 taacatattatatttataagataagatttttatttttataatccttaatcaatgccatgagggcac 37183168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 53145200 - 53145273
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||  | ||||||  |||||||||||| |||||||||||||| | |||||||||  ||||| ||||||    
T  53145200 cttatattttcatgataaattttttatttatagtttccttaaccattgtcttgagggcactagttagcaagacc 53145273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 28176844 - 28176892
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    |||||||||||||||||||||| || ||||| || ||| ||||||||||    
T  28176844 atcttatatttctaagataaaatttctatttgtaaatttcttaaccatt 28176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37431833 - 37431785
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattcctt 49  Q
    ||||||||||||||| || |||||||||| |||||||| || |||||||    
T  37431833 aagtaacatcttataattttaagataaaatttttatttgtaaattcctt 37431785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5611180 - 5611129
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaac 52  Q
    |||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  5611180 aagtaacatcttatatttctaagacaaaatttctatttatagattccttaac 5611129  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 227397 - 227479
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||  || | |||| || |||||||||||||||||||||||||| | ||| ||| |||||| ||||||    
T  227397 aagtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccattgccctaaggacactggttagcaagacc 227479  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19320322 - 19320240
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||| ||||||||  |||| ||||| ||||||| |||||||||||| |||| || |||||||||  ||||| ||||||    
T  19320322 aagtaacattttatatttgcaagacaaaaaatttatttgtagattccttaatcattaccttgagggcactagttagcaagacc 19320240  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 31223253 - 31223328
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||| |||| |||| |||||||| ||||||| ||||||| |||| ||  ||||||| |||| ||||||    
T  31223253 atcttatatttccaagacaaaatttttatttgtagattcattaaccaatgccttggtggcaccgattagcaagacc 31223328  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 32800276 - 32800335
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 69  Q
    ||||||||| ||||| |||  || ||||||||| |||||||||||||| |||||||||||    
T  32800276 cttatatttttaagacaaattttctatttatagtttccttaaccattgtcatgagggcac 32800335  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 17454024 - 17453942
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||||||||||||  || |||||| ||| ||||||| | || ||||||| |||| ||| ||||| |||||| ||||||    
T  17454024 aagtaacatcttatattttcaaaataaaattttcatttataaaatcgttaaccaatgccctgaaggcactggttagcaagacc 17453942  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 6770906 - 6770978
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    ||||||||  ||||||||  || ||||||||| ||||||||||| |||| | ||||||| |||||| ||||||    
T  6770906 ttatattttcaagataaattttctatttatagtttccttaaccaatgccctaagggcactggttagcaagacc 6770978  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 11320197 - 11320242
Alignment:
Q  11 ttatatttctaagataaaaattttatttatagattccttaaccatt 56  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  11320197 ttatatttctaagatagaaattttaattatagattccttaaccatt 11320242  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34346951 - 34347032
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacctaataa 89  Q
    |||||||||||  |||| |||  |||||||| ||||||||||||||||||| |||||| ||| |||||| |||||| |||||    
T  34346951 atcttatattttcaagacaaattttttatttgtagattccttaaccattgctatgaggacactggttagtaagacccaataa 34347032  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5471317 - 5471369
Alignment:
Q  31 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||| || ||||||||||||| |||||||||||||||| ||||||    
T  5471317 ttttatttatagttttcttaaccattgccctgagggcaccggttagcaagacc 5471369  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 3600181 - 3600246
Alignment:
Q  10 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    |||||||||  |||| ||| ||||||||||||| || ||||||||||||| |||| ||||||||||    
T  3600181 cttatattttcaagacaaatattttatttatagttttcttaaccattgccctgagagcaccggtta 3600246  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11815973 - 11816048
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 76  Q
    ||||||||||||||||||  |||| |||| || ||||| ||||||| |||||||||| | |||| |||| ||||||    
T  11815973 aagtaacatcttatattttcaagacaaaatttctatttttagattcattaaccattgtcctgagagcactggttag 11816048  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35579392 - 35579341
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaac 52  Q
    ||||||||| ||||||||| |||| |||||||||||||||| ||||| ||||    
T  35579392 aagtaacattttatatttcaaagacaaaaattttatttataaattccctaac 35579341  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6646350 - 6646424
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 75  Q
    ||||||||| ||||||||| || ||||||||||||||| || |||  |||| ||||||  | |||||||||||||    
T  6646350 aagtaacatattatatttcaaatataaaaattttatttgtatattatttaatcattgctctaagggcaccggtta 6646424  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 22294053 - 22294103
Alignment:
Q  8 atcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    |||||||||||| |||| |||| || ||||| |||||||||||||||||||    
T  22294053 atcttatatttccaagacaaaatttctatttgtagattccttaaccattgc 22294103  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1920797 - 1920744
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||| ||||||||||||||| |||| || |||| ||||||| ||||||||    
T  1920797 aagtaacaccttatatttctaagacaaaatttctattcatagatttcttaacca 1920744  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 6102923 - 6102972
Alignment:
Q  34 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 83  Q
    |||||||||||||||||||||||||| | || |||| |||||| ||||||    
T  6102923 tatttatagattccttaaccattgccctaagtgcactggttagcaagacc 6102972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30293874 - 30293821
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 54  Q
    |||||||||||||||||| ||||| |||| || ||||| ||||||| |||||||    
T  30293874 aagtaacatcttatatttttaagacaaaatttctatttgtagattctttaacca 30293821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8405823 - 8405867
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagatt 45  Q
    |||||| | ||||||||| |||||||||||||||||| |||||||    
T  8405823 aagtaaaaacttatatttttaagataaaaattttattaatagatt 8405867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 51708 - 51764
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 57  Q
    ||||||||| ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  51708 aagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattg 51764  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15417 - 15337
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaaga 81  Q
    ||||||||||||||||||  |||| ||||||| |||||||| ||||||||| ||||  | |||| |||| |||||| ||||    
T  15417 aagtaacatcttatattttcaagacaaaaattctatttataaattccttaatcattatcctgagagcactggttagcaaga 15337  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 120731 - 120788
Alignment:
Q  1 aagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 58  Q
    |||| |||||||||||||  |||| |||| || ||||| |||||||||||||||||||    
T  120731 aagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccattgc 120788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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