View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_119 (Length: 238)
Name: NF3582_low_119
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_119 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 51849865 - 51849643
Alignment:
| Q |
16 |
acatataaatgagctgtagtacacattatttgagaacacataaagataggttgaagagaaagacaggttggcagtattccgaggtgcttagatacaatgt |
115 |
Q |
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| T |
51849865 |
acatataaatgagctgtagtacacattatttgagaacacatgaagataggttgaagagaaagacaggttggcagtattccgaggtgcttagatacaatgt |
51849766 |
T |
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| Q |
116 |
taagaggagaaaacagacaaaatatctatatgttgatcccacattgcagcacatattttatctgtgactgatcccacaatacatgttattcctttttaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51849765 |
taagaggagaaaacagacaaaatatctatatgttgatcccacattgcagcacatattttatctgtgactgatcccacaatacatgttattcctttttaaa |
51849666 |
T |
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| Q |
216 |
aggggttataattattttgatcc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
51849665 |
aggggttataattattttgatcc |
51849643 |
T |
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