View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_12 (Length: 566)
Name: NF3582_low_12
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 5 - 558
Target Start/End: Complemental strand, 41956747 - 41956194
Alignment:
| Q |
5 |
accaattatatttttatagattactaatgtaattataatattttgaacattggaaattctctaagaatttgttaaacatatatttgttggatgagttttg |
104 |
Q |
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| T |
41956747 |
accaattatatttttatagattactaatgtaattataatattttgaacattggaaattctctaagaatttgttaaacatatatttgttggatgagttttg |
41956648 |
T |
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| Q |
105 |
acttatatagcgttggatcaggagagttcaaggtattattcatttggttatgaactatttttagaaggaannnnnnncatccacttacaannnnnnnnnn |
204 |
Q |
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| T |
41956647 |
acttatatagcgttggatcaggagagttcaaggtattattcatttggttatgaactatttttagaaggaatttttttcatccacttacaatttttttttt |
41956548 |
T |
|
| Q |
205 |
ggagttcatccacatatatcacgcattaatatgatatacatataacgattaaaacctatgattttacattttattgaacaacgtctacttcgcgagtaga |
304 |
Q |
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| T |
41956547 |
ggagttcatccacatatatcacgcattaatatgatatacacataacgattaaaacctatgattttacattttattgaacaacgtctacttcgcgagtaga |
41956448 |
T |
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| Q |
305 |
tcacactaatcatggtttttatgtgtttaattaccttgtctcgtataccaacaaataggtcagtcattttgttcctgaaccccacttctgattctgcaat |
404 |
Q |
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| T |
41956447 |
tcacactaatcatggtttttatgtgtttaattaccttgtctcgtataccaacaaataggtcagtcattttgttcctcaaccccacttctgattctgcagt |
41956348 |
T |
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| Q |
405 |
atcaaacttatatcagacaattgcagctcaattcattcctcccggtcgttttaacttaccattttctcgcacactgcctaaatgaaaagatagggggaaa |
504 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41956347 |
atcaaacttatatcagacaatagcagctcaattcattctccccggtcgttttaacttaccattttctcgcacactgcctaaatgaaaagatagggggaaa |
41956248 |
T |
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| Q |
505 |
gaggggaagtttctaaaaaagttctacgagaataaccttattacatgatgatgt |
558 |
Q |
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| T |
41956247 |
gaggggaagtttctaaaaaagttctacgagaataaccttattatatgatgatgt |
41956194 |
T |
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