View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_129 (Length: 236)
Name: NF3582_low_129
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_129 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 29051259 - 29051037
Alignment:
| Q |
14 |
cattttatttagtcaacttatttctttctcattcatattgtgtcttaatttaatgaatatttgtttggacattagttagttcattattattttagtttca |
113 |
Q |
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| T |
29051259 |
cattttatttaggcaacttatttctttctcattcatattgtgtcttaatttaatgaatatttgtttggacattagttagttcattattattttagtttca |
29051160 |
T |
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| Q |
114 |
tatgaaaaaactttagccattgactgattgctctagaagtaaccacttcttagttcaaattcatacttttatttatcttggcttttggttatcgaaacaa |
213 |
Q |
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| T |
29051159 |
tatgaaaaaactttagccattgactgattgctatagaagtaaccacttcttagttcaaattcatacttttatttatcttggcttttggttatcgaaacaa |
29051060 |
T |
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| Q |
214 |
tcattggtcagacttaatcaacc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
29051059 |
tcattggtcagacttaatcaacc |
29051037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 24619249 - 24619431
Alignment:
| Q |
14 |
cattttatttagtcaacttatttctttctcattcatattgtgtcttaatttaatgaatatttgtttggacattagttagttcattattattttagtttca |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24619249 |
cattttatttaggcaacttatttctttctcattcatattgtgtcttgatttaatgaatatttgtttggtcattagttagttcatta---ttttagtttca |
24619345 |
T |
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| Q |
114 |
tatgaaaaaactttagccattgactgattgctctagaagtaaccacttcttagttcaaattcatacttttatttatcttggctttt |
199 |
Q |
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| T |
24619346 |
catgaagaaactttagccattgattgattgctctagatgtaaccagttcttagttcaaattcatacttttatttatcttgactttt |
24619431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 17382453 - 17382393
Alignment:
| Q |
38 |
tttctcattcatattgtgtcttaatttaatgaatatttgtttggaca-ttagttagttcatt |
98 |
Q |
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| T |
17382453 |
tttctcattcatattgtatatta-tttaatgaatatttttttggacatttatttagttcatt |
17382393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 1344914 - 1344958
Alignment:
| Q |
158 |
acttcttagttcaaattcatacttttatttatcttggcttttggtt |
203 |
Q |
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| T |
1344914 |
acttcttagtt-aaattcatatttttatttatcttggcttttggtt |
1344958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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