View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_13 (Length: 544)
Name: NF3582_low_13
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 208 - 536
Target Start/End: Complemental strand, 7461333 - 7461001
Alignment:
| Q |
208 |
gtatctagttgcaataataaattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnn |
303 |
Q |
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| T |
7461333 |
gtatctagttgcaataataaattaaataagaagaggaagaaagaggtataccttggtttcaaggagacacttctcaagaatggtggattcatgatttttt |
7461234 |
T |
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| Q |
304 |
nnaagacttaagtacccttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
403 |
Q |
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| T |
7461233 |
ttaagactgaagtactcttcttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctcca |
7461134 |
T |
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| Q |
404 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
503 |
Q |
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| T |
7461133 |
ttgcaagcctatccttcttctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgtt |
7461034 |
T |
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| Q |
504 |
catgtcgttggcactgttttctccacctttgtt |
536 |
Q |
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| T |
7461033 |
catgtcgttagcactgttttctccacctttgtt |
7461001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 227 - 536
Target Start/End: Complemental strand, 7446370 - 7446057
Alignment:
| Q |
227 |
aattaaataagaagaggaagaaagag----accttggtttcaaggagacacttctcaagaatggtggattcatgaannnnnnnaagacttaagtaccctt |
322 |
Q |
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| T |
7446370 |
aattaaataagaagaggaagagagaggtataccttggtttcaagaagacacttctcaagaatggtggattcatgaatttttttaagactgaagtactctt |
7446271 |
T |
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| Q |
323 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
422 |
Q |
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| T |
7446270 |
cttcaagtttcttgttcttccacctagcccttcgattctggaaccatactgcaacttgtcttggatctaaaccaagctccattgcaagcctatccttctt |
7446171 |
T |
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| Q |
423 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttggcactgttt |
522 |
Q |
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| T |
7446170 |
ctctgactcaagtttatgttcatttccaaagttttcttccaaaatattcacttgttcatcactcaatttcctctttttgttcatgtcgttagcactgttt |
7446071 |
T |
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| Q |
523 |
tctccacctttgtt |
536 |
Q |
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| T |
7446070 |
tctccacctttgtt |
7446057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7461532 - 7461391
Alignment:
| Q |
1 |
tggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatatagtaatataatattgttggagaaa |
100 |
Q |
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| T |
7461532 |
tggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaa--------tataatattgttggagaaa |
7461441 |
T |
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| Q |
101 |
tgatgattggaaattaaaattttcatgtcaaattataattcaatccactg |
150 |
Q |
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| T |
7461440 |
tgatgattggaaattaaaattttgatgtcaaattataattcaatccactg |
7461391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7446544 - 7446468
Alignment:
| Q |
1 |
tggtagcatgcttgccctaaattgacgttactagtgttgtgttgatacaaataaaaacaaaacactatagtaatata |
77 |
Q |
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| T |
7446544 |
tggtaacatgcttgccctaaattgacgttactggtgttgtgttgagacaaataaaaacaaaacactatagtaatata |
7446468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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