View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_134 (Length: 227)
Name: NF3582_low_134
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_134 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 37619058 - 37618816
Alignment:
| Q |
7 |
ttttcaagtaagaaacaacagttagtccatgttctttttggattttgtatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgta |
106 |
Q |
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| T |
37619058 |
ttttcaagtaagaaacaacagttagtccatgttctttttggattttgtatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgta |
37618959 |
T |
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| Q |
107 |
ttctggaagttaatccattgcatcaaggtcccacctgcaaaacataaagttcagttt----------------------tttctatcgttaatcaagttt |
184 |
Q |
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| T |
37618958 |
ttctggaagttgatccattgcatcaaggtcccacctgcaaaacataaagttcagtttagcatggttaatttataattagtttctatcgttaattaagttt |
37618859 |
T |
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| Q |
185 |
aaatacatacaaaatctatagaagcgtaccttttaattgcctt |
227 |
Q |
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| T |
37618858 |
aaatacatacaaaatctatagaagcgtaccttttaattgcctt |
37618816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 37627471 - 37627315
Alignment:
| Q |
7 |
ttttcaagtaagaaacaacagttagtccatgttctttttggattttgtatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgta |
106 |
Q |
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| T |
37627471 |
ttttcaagcaagaaacaacagttagtccatgttctttttgaattctatatgcaatttcatttgtggtgttatataatgccatatagcatatcttcatgta |
37627372 |
T |
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| Q |
107 |
ttctggaagttaatccattgcatcaaggtcccacctgcaaaacataaagttcagttt |
163 |
Q |
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| T |
37627371 |
ttctggaagttgctccattccatcaaggtcccatctgcaaaacataaagtttagttt |
37627315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 37627285 - 37627230
Alignment:
| Q |
172 |
gttaatcaagtttaaatacatacaaaatctatagaagcgtaccttttaattgcctt |
227 |
Q |
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| T |
37627285 |
gttaatcaagattaaatacatacaaattctactgaagcaaaccttttaattgcctt |
37627230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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