View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_140 (Length: 219)
Name: NF3582_low_140
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 6771414 - 6771529
Alignment:
| Q |
16 |
ccaagttctgtttccctttcaattaatggaaggaactttccatctattgctttgcagccaaaaggacgccggtttcatgttacatgcgcggtaagattga |
115 |
Q |
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| T |
6771414 |
ccaagttctgtttccctttcaattaagggaaggaactttccatctattgctttgcagccaaaaggacgtcggtttcatgttacatgcgcggtaagattga |
6771513 |
T |
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| Q |
116 |
ttttgacatgtctggt |
131 |
Q |
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| T |
6771514 |
ttttcacatgtttggt |
6771529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 6767385 - 6767482
Alignment:
| Q |
16 |
ccaagttctgtttccctttcaattaatggaaggaactttccatctattgctttgcagccaaaaggacgccggtttcatgttacatgcgcggtaagatt |
113 |
Q |
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| T |
6767385 |
ccaagttctgtttccctttcaattaagggaaggaactttccatctattgctttgcagccaaaaggacgtcggtttcatgttacatgcgcggtaagatt |
6767482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 6767965 - 6768046
Alignment:
| Q |
126 |
tctggtaatcaaagtccttagttgtaccaagttatctgcattacaaaatctcctgttttgttgttatctgttcaagactttcat |
209 |
Q |
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| T |
6767965 |
tctggtaatgaaagtccttagttgtacctagttatctgcatttcaaaatctcatg--ttgctgttatctgttgaagattttcat |
6768046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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