View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_143 (Length: 215)
Name: NF3582_low_143
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 32818977 - 32819174
Alignment:
| Q |
1 |
ttcatatattattttccaatctcttattctcttagaggctatgtgacagctaaaggtatgtaattgagaaagacctttattccttcctttacggtgcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32818977 |
ttcatatattattttccaatctcttattctcttagaggctatgtgacagctaaaggtatgtaattgagaaagacctttattccttcctttacggtgcatt |
32819076 |
T |
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| Q |
101 |
cttttagcagattgtatacagtgacttttgcannnnnnnaattgtcacaagtcacgacgacaaagttcttagctgtccaaatattatgagtgtttaac |
198 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32819077 |
cttttagcagattgtatacagtgacttttgcatttttttaattgtcacaagtcacgacgacaaagttcttagctgtccaaatattatgagtgtttaac |
32819174 |
T |
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