View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_145 (Length: 211)
Name: NF3582_low_145
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_145 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 10784228 - 10784048
Alignment:
| Q |
16 |
aaaggctaggtagaaaaaccaagagattgtgcctag----gtcgtttgctttatcgtacctcatagcattttcctttaatatttgatagttctgacaatg |
111 |
Q |
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| T |
10784228 |
aaaggctaggta-aaaaagcaagagattgtgcctagctaggtcgtttgctttatcatacctcatagcattttcctttaatatttgatagttctgacaatg |
10784130 |
T |
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| Q |
112 |
atcacaatttactataggaggagcaatatatcccgggcttaagcttggtaaatgagtttcatccagaaatgagaagagagga |
193 |
Q |
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| T |
10784129 |
atcacaatttactacaggaggagcaacatatccaggacttaagcttggtaaatgagtttcatccagaaatgagaagagagga |
10784048 |
T |
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 50507260 - 50507383
Alignment:
| Q |
18 |
aggctaggtagaaaaaccaagagattgtgcctaggtcgtttgcttt------atcgtacctcatagcattttcctttaatatttgatagttctgacaatg |
111 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50507260 |
aggctaggt-gaaaaagcaagagattgtgcctaggtcgtttgctttttttttatcgtacctcgtagcattttcctttaatatttgatagttctgacaatg |
50507358 |
T |
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| Q |
112 |
atcacaatttactataggaggagca |
136 |
Q |
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| T |
50507359 |
atcacaatttactataggaagagca |
50507383 |
T |
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