View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_149 (Length: 205)
Name: NF3582_low_149
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 2600616 - 2600441
Alignment:
| Q |
13 |
aatatcaaggttcttgacgtgatcttgatttataccttgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttc |
112 |
Q |
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| T |
2600616 |
aatatcaaggttcttgacgtgatcgtgatttataccttgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttc |
2600517 |
T |
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| Q |
113 |
ggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaac |
188 |
Q |
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| T |
2600516 |
ggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaac |
2600441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 50 - 187
Target Start/End: Complemental strand, 2573013 - 2572876
Alignment:
| Q |
50 |
tgtgcttaagtggtggctcattttttattaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaag |
149 |
Q |
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| T |
2573013 |
tgtgcttaaattgtgcctctttttttattaactatatatttttatttatgagacagggctttcggaactagtttatcaaatgtgaagtacttctcagaag |
2572914 |
T |
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| Q |
150 |
caagtgcagcaggagaaagaataatggaaatgataaaa |
187 |
Q |
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| T |
2572913 |
caagtgcagcaggagaaagaataatggaagtgataaaa |
2572876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 2677805 - 2677712
Alignment:
| Q |
94 |
cttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaa |
187 |
Q |
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| T |
2677805 |
cttatgtggtagggctttaggagctggtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaatgataaaa |
2677712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 2586099 - 2586182
Alignment:
| Q |
104 |
agggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaa |
187 |
Q |
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| T |
2586099 |
agggctttaggagctggtatgtcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaagtgataaaa |
2586182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 77 - 186
Target Start/End: Complemental strand, 2645384 - 2645275
Alignment:
| Q |
77 |
ttaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
176 |
Q |
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| T |
2645384 |
ttaattatatatttttccttatgtgacaggactttaggagctgttttatcaaatgtgaagtacttttcagaagcaagtgtagcaggagaaagaataatgg |
2645285 |
T |
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| Q |
177 |
aaatgataaa |
186 |
Q |
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| T |
2645284 |
atgtgataaa |
2645275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 2619789 - 2619871
Alignment:
| Q |
104 |
agggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaa |
186 |
Q |
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| T |
2619789 |
agggctttaggagctggtctatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatggaaatgataaa |
2619871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 2448397 - 2448464
Alignment:
| Q |
120 |
gtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaa |
187 |
Q |
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| T |
2448397 |
gtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaatgataaaa |
2448464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 2432512 - 2432597
Alignment:
| Q |
102 |
atagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatggaaatgataaaa |
187 |
Q |
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| T |
2432512 |
atagggcttttggaacttgtttctcaaatgtgaggtacttcgcagaagcaagtgtggcaggagaaagaataatggaagtgataaaa |
2432597 |
T |
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