View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_15 (Length: 535)

Name: NF3582_low_15
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_15
NF3582_low_15
[»] chr3 (16 HSPs)
chr3 (241-518)||(3592902-3593195)
chr3 (9-171)||(3593265-3593427)
chr3 (113-171)||(3290821-3290879)
chr3 (237-357)||(15777308-15777425)
chr3 (361-429)||(24177968-24178036)
chr3 (113-171)||(18705368-18705426)
chr3 (91-171)||(9733452-9733527)
chr3 (24-171)||(18534195-18534337)
chr3 (389-426)||(32657336-32657373)
chr3 (238-315)||(6460042-6460118)
chr3 (122-171)||(39727609-39727658)
chr3 (120-171)||(15777215-15777265)
chr3 (237-315)||(9733591-9733668)
chr3 (288-357)||(18534437-18534506)
chr3 (288-357)||(30993253-30993323)
chr3 (389-422)||(32658589-32658622)
[»] chr8 (7 HSPs)
chr8 (9-171)||(42147609-42147767)
chr8 (112-171)||(40391564-40391623)
chr8 (237-357)||(17290631-17290751)
chr8 (113-171)||(17290819-17290877)
chr8 (361-429)||(42147378-42147446)
chr8 (114-171)||(9883813-9883870)
chr8 (113-162)||(15113413-15113462)
[»] chr5 (4 HSPs)
chr5 (9-171)||(21143678-21143835)
chr5 (237-357)||(39435924-39436043)
chr5 (287-357)||(39176448-39176520)
chr5 (66-98)||(39176668-39176700)
[»] chr4 (14 HSPs)
chr4 (237-357)||(23974129-23974249)
chr4 (237-352)||(19611888-19612003)
chr4 (32-164)||(13884060-13884187)
chr4 (237-353)||(25126202-25126318)
chr4 (238-352)||(15706694-15706808)
chr4 (91-171)||(19611749-19611824)
chr4 (90-168)||(25126063-25126135)
chr4 (90-171)||(14645942-14646018)
chr4 (122-170)||(11153979-11154027)
chr4 (113-169)||(15706862-15706918)
chr4 (288-357)||(11153820-11153890)
chr4 (304-352)||(14645763-14645810)
chr4 (354-422)||(18552412-18552479)
chr4 (91-169)||(23974315-23974388)
[»] chr6 (13 HSPs)
chr6 (237-357)||(9548761-9548880)
chr6 (20-171)||(19566644-19566791)
chr6 (53-171)||(19893060-19893173)
chr6 (20-107)||(9548970-9549057)
chr6 (91-171)||(12980339-12980414)
chr6 (9-108)||(13570925-13571024)
chr6 (10-108)||(13566378-13566476)
chr6 (122-171)||(19768908-19768957)
chr6 (20-136)||(19564999-19565110)
chr6 (9-84)||(13575483-13575559)
chr6 (9-84)||(13578022-13578098)
chr6 (288-357)||(19769046-19769117)
chr6 (124-171)||(9548951-9548998)
[»] scaffold0281 (2 HSPs)
scaffold0281 (288-350)||(1859-1921)
scaffold0281 (114-171)||(1994-2051)
[»] chr1 (9 HSPs)
chr1 (90-171)||(12786428-12786504)
chr1 (237-357)||(12786243-12786364)
chr1 (114-171)||(9131527-9131584)
chr1 (237-357)||(18513786-18513906)
chr1 (288-350)||(23632181-23632244)
chr1 (237-362)||(9131648-9131772)
chr1 (124-171)||(12484114-12484161)
chr1 (389-423)||(18513958-18513992)
chr1 (114-171)||(18513665-18513722)
[»] scaffold0088 (1 HSPs)
scaffold0088 (237-352)||(35456-35571)
[»] chr7 (14 HSPs)
chr7 (20-171)||(11508467-11508613)
chr7 (246-357)||(32945355-32945463)
chr7 (288-423)||(3310877-3311014)
chr7 (288-353)||(3312651-3312715)
chr7 (122-171)||(18147481-18147530)
chr7 (361-427)||(21859820-21859885)
chr7 (20-112)||(3311162-3311254)
chr7 (237-357)||(18147571-18147691)
chr7 (38-171)||(32945499-32945627)
chr7 (66-171)||(33721432-33721532)
chr7 (20-164)||(3312834-3312974)
chr7 (298-345)||(13695873-13695920)
chr7 (298-355)||(13696071-13696128)
chr7 (67-107)||(34707315-34707354)
[»] chr2 (9 HSPs)
chr2 (9-171)||(20263454-20263607)
chr2 (114-171)||(16093714-16093771)
chr2 (237-357)||(16093532-16093651)
chr2 (241-335)||(27386908-27387002)
chr2 (237-333)||(32623568-32623664)
chr2 (90-171)||(32623428-32623504)
chr2 (384-427)||(16093423-16093466)
chr2 (361-422)||(20180863-20180923)
chr2 (237-317)||(20263671-20263751)
[»] scaffold0094 (1 HSPs)
scaffold0094 (298-357)||(48262-48321)
[»] scaffold0019 (1 HSPs)
scaffold0019 (237-341)||(182966-183070)
[»] scaffold0005 (2 HSPs)
scaffold0005 (90-171)||(171272-171348)
scaffold0005 (304-352)||(171480-171527)
[»] scaffold0978 (1 HSPs)
scaffold0978 (113-171)||(2995-3053)
[»] scaffold0815 (1 HSPs)
scaffold0815 (384-416)||(1279-1311)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 241 - 518
Target Start/End: Complemental strand, 3593195 - 3592902
Alignment:
Q  241 ggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggaggg 340  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  3593195 ggttgtggagagaagaggcaaggaggaatagcgagaataac-ctatggagagatttctccgtaggaaatcatcaattcggcaaactagaggtaaggggag 3593097  T
Q  341 agtctctattcatcata-----------------cgtgtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaattt 423  Q
    |||||||||||||||||                 ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593096 agtctctattcatcataagggttgtatgatcatacgtgtagtgcagggtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaattt 3592997  T
Q  424 gtgtccctttctgttgctgcaattatatattttcgaaaacctttttatgcactttcgaattcagtctaaatttgcttttacggttaagttgcttt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  3592996 gtgtccctttctgttgctgcaattatatattttcgaaaacctttttatgcactttcgaattcagtcaaaatttgcttttacagttaagttgcttt 3592902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 3593427 - 3593265
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaattagaggtacaaatagtaacctaaaaaagattagtaacaaacc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3593427 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaattagaggtacaaatagtaacctaaaaaagattagtaacaaacc 3593328  T
Q  109 tagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  3593327 tagactagaggacatatagtaatctaaaaagattggtaacaaactcaattagagcttataaat 3593265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 3290879 - 3290821
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3290879 ctagagaacatatagtaatttaaaaagattggtaacaaactcaactagagcttataaat 3290821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 15777308 - 15777425
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaagg 336  Q
    |||||||| ||||||||| |||||| |||||||||||||||  || |||  |||||||||||||||||||| | |||| ||  |||||||||||||||||    
T  15777308 ctagggttatggagagaataggcaaagaggaatagcgagaa-gaacctagagagagatttcaccgtaggaatttatcacttttgcaaactagaggtaagg 15777406  T
Q  337 agggagtctctattcatcata 357  Q
     |||||| | |||||||||||    
T  15777407 -gggagt-tttattcatcata 15777425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 24177968 - 24178036
Alignment:
Q  361 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtcc 429  Q
    ||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  24177968 gtagtgaagggtttttattttccattgtttttcatgatcttttaatgaattcatgttatattcgtgtcc 24178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 18705368 - 18705426
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||    
T  18705368 ctagaggacatatagtaatctaaaaatattggtaacaaactcaattagagtttataaat 18705426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 9733452 - 9733527
Alignment:
Q  91 aaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||||||||| ||     |||||||||||||| ||||||||||||||| | |||||||||||| ||||||||    
T  9733452 aaagattagtaacaaacctgga-----ggacatatagtaatctaaaaagattggtaacatactcaattagagtttataaat 9733527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 18534195 - 18534337
Alignment:
Q  24 gaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagaggaca 122  Q
    |||||||||| | ||||||||| |||||||||| || ||||| ||||| ||||| ||||||| || ||||  ||||| ||||||  ||   ||||||| |    
T  18534195 gaatagctagataatgtagttacaggaagaataataacaaaacttagacgtacagatagtaatctgaaaat-attagcaacaaa--ta---tagaggaaa 18534288  T
Q  123 tatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||||||||||| ||| ||||| |||||||  ||||||||    
T  18534289 tatagtaatttaaaaagattgctaacaaacttaattagaatttataaat 18534337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 32657336 - 32657373
Alignment:
Q  389 ttttcatgatcttttaatgaattcatgttaaatttgtg 426  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32657336 ttttcatgatcttttaatgaattcatgttaaatttgtg 32657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 6460118 - 6460042
Alignment:
Q  238 tagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa 315  Q
    ||||||||||||||||||||||||||||| ||| ||||||   |||||  ||||||||||| |||||||  |||||||    
T  6460118 tagggttgtggagagaagaggcaaggaggcataacgagaa-ggatctagagagagatttcatcgtaggatttcatcaa 6460042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 39727609 - 39727658
Alignment:
Q  122 atatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||| |||| ||||||||||| ||| |||||||||||||||||||||||    
T  39727609 atataataatctaaaaagattgataacaaactcaattagagcttataaat 39727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 15777215 - 15777265
Alignment:
Q  120 acatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||| |||| |||||||||| |||||||||||||| ||||||||    
T  15777215 acatatagtaatctaaacagattggtaacaaactcaattagag-ttataaat 15777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 9733591 - 9733668
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa 315  Q
    ||||||||||||||| ||||| |||||||| | | ||||||  ||||||  |||||||||||| ||||||| |||||||    
T  9733591 ctagggttgtggagaaaagagtcaaggaggcacaccgagaa-gaatctagagagagatttcacagtaggaattcatcaa 9733668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 18534437 - 18534506
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 357  Q
    ||||||||  ||| |||||||||||||| ||||  ||||||||||||||| ||||||||||||||| ||||    
T  18534437 gagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagg-gggagtctctattcaccata 18534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 30993253 - 30993323
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 357  Q
    |||||| ||||| ||| ||| ||||||| |||  |||||||||||||||| ||||||||||||||| ||||    
T  30993253 gagagacttcactgtatgaattcatcaaattctccaaactagaggtaaggggggagtctctattcaccata 30993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 32658622 - 32658589
Alignment:
Q  389 ttttcatgatcttttaatgaattcatgttaaatt 422  Q
    |||||||||||||||||||||||||| |||||||    
T  32658622 ttttcatgatcttttaatgaattcattttaaatt 32658589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 42147767 - 42147609
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaatt-agaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    ||||||| || ||||||||||||||||| |||||||| | ||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||||||    
T  42147767 agcagagggaggtgtgaatagctaggtgttgtagttacacgaagaatagtaacaaaatttagaggtacaaacagtaacctgaaaaagattagtaacaaac 42147668  T
Q  108 ctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
          |||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||    
T  42147667 -----atagaggacatatagtaatctaaaaagattggtaacaaactcaattataacttataaat 42147609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 40391623 - 40391564
Alignment:
Q  112 actagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  40391623 actagaggacatatagtaatataaaaagattggtaacaaactcaattagagcttataaat 40391564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 17290751 - 17290631
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    ||||||||||||||||||||| |||||||||||| ||||||  || |||  ||||||||| |||||| ||||| ||||| |||   ||| ||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaa-gaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaag 17290653  T
Q  336 gagggagtctctattcatcata 357  Q
    | ||||||||||||||| ||||    
T  17290652 gggggagtctctattcaccata 17290631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 17290877 - 17290819
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  17290877 ctagagaacatatagtaatctaaaaatatttgtaataaactcaattagagcttataaat 17290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 429
Target Start/End: Complemental strand, 42147446 - 42147378
Alignment:
Q  361 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtcc 429  Q
    |||||||||  ||| | |||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  42147446 gtagtgaaggttttttatttttcattgtttttcatgatcttttaatgaattcatgttacattcgtgtcc 42147378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 9883870 - 9883813
Alignment:
Q  114 tagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||| | |||||||||    
T  9883870 tagaggaaatatagtaatctaaaaagattggtaacaaactcaattacaacttataaat 9883813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 15113462 - 15113413
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagag 162  Q
    |||||| | |||||||||  ||||||||||||||| ||||||||||||||    
T  15113462 ctagagaatatatagtaagctaaaaagattggtaacaaactcaattagag 15113413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 21143678 - 21143835
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    ||||||| |||||||||||||| ||||| | |||||| |  ||||||| || |||||| |||| ||||||||||||  || ||||  |||||||||||||    
T  21143678 agcagagtgatgtgtgaatagcaaggtggtatagttacaaaaagaatattaacaaaatctagatgtacaaatagtattctgaaaat-attagtaacaaac 21143776  T
Q  108 ctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||     ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  21143777 ctag-----aggacatatagtaatctgaaaagattggtaacaaactcaattagagcttataaat 21143835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 39435924 - 39436043
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    ||||| || ||||||||||| ||||| ||| ||||  |||| || ||||  |||||||||||||||||||||||||||| |||   ||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaa-tctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaag 39436022  T
Q  336 gagggagtctctattcatcata 357  Q
    | ||||||||||||||| ||||    
T  39436023 g-gggagtctctattcaccata 39436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 39176520 - 39176448
Alignment:
Q  287 ggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaa-ggagggagtctctattcatcata 357  Q
    |||||||||||||| ||| |||||||||| ||||  ||||||||||||| || || |||||||||||||||||    
T  39176520 ggagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcata 39176448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 39176700 - 39176668
Alignment:
Q  66 ttagaggtacaaatagtaacctaaaaaagatta 98  Q
    ||||||||||||||||||| |||||||||||||    
T  39176700 ttagaggtacaaatagtaatctaaaaaagatta 39176668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 23974249 - 23974129
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaa-g 335  Q
    |||||||| |||||||||||| ||| ||||||||||||||| ||  |||  || |||||||||||||||||||||||||||| ||||||||||||||| |    
T  23974249 ctagggttatggagagaagagacaaagaggaatagcgagaagaac-ctagagaaagatttcaccgtaggaaatcatcaattctgcaaactagaggtaatg 23974151  T
Q  336 gagggagtctctattcatcata 357  Q
    | |||||| | |||||||||||    
T  23974150 gggggagtttttattcatcata 23974129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 19611888 - 19612003
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||||||| ||||||||||||||||| ||||||||||  || |||  ||||||||||| |||||| ||||||||| ||||  ||| |||||||| |    
T  19611888 ctagggttgtggggagaagaggcaaggagggatagcgagaa-gaacctagagagagatttcatcgtagggaatcatcaatttcgcaaaattagaggtatg 19611986  T
Q  336 gagggagtctctattca 352  Q
    | |||||||||||||||    
T  19611987 gggggagtctctattca 19612003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 13884060 - 13884187
Alignment:
Q  32 aggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagaggacatatagtaa 130  Q
    ||||| ||||||||   ||||||||||| ||||| ||||||||||||||||||| ||  ||||||||  ||| ||||     ||||||||||||||||||    
T  13884060 aggtggtgtagttacgagaagaatagtaacaaaaattagaggtacaaatagtaatct-gaaaagattgttaataaac-----ctagaggacatatagtaa 13884153  T
Q  131 tttaaaaagattggtaataaactcaattagagct 164  Q
    | ||||||| ||||||| ||||||||||||||||    
T  13884154 tctaaaaagtttggtaacaaactcaattagagct 13884187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 25126202 - 25126318
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||| ||| |||||||||||| |||||||||||||||  || |||  |||| |||| | |||||||||||||||| ||||  |||||||||||| |    
T  25126202 ctagggttatggtgagaagaggcaaagaggaatagcgagaa-gaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatg 25126300  T
Q  336 gagggagtctctattcat 353  Q
    | ||||||||||||||||    
T  25126301 gggggagtctctattcat 25126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 15706808 - 15706694
Alignment:
Q  238 tagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaagg 336  Q
    ||||||| ||||||||| || ||| |||||||||||||||  ||||||  | ||||||||| |||| ||||||||||| ||||  ||||||||||||| |    
T  15706808 tagggttatggagagaatagacaaagaggaatagcgagaa-gaatctaaagggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatg 15706710  T
Q  337 agggagtctctattca 352  Q
     |||||||||||||||    
T  15706709 ggggagtctctattca 15706694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 19611749 - 19611824
Alignment:
Q  91 aaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||     ||||||||||  ||| ||||||||||||||| ||||||||||| |||||||||||    
T  19611749 aaagattagtaacaaacctag-----aggacatatataaatctaaaaagattggtaacaaactcaattaaagcttataaat 19611824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 25126063 - 25126135
Alignment:
Q  90 aaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttata 168  Q
    ||||||||||||||||||     ||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||||    
T  25126063 aaaagattagtaacaaac-----ctagaggacatttagtaatctaaaaagatt-gtaacaaactcaattagagcttata 25126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 14646018 - 14645942
Alignment:
Q  90 aaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||     | |||||||| ||| |||||| |||||||| |||||||||||||| ||||||||    
T  14646018 aaaagattagtaacaaacctaga-----gaacatatagaaatctaaaaaaattggtaacaaactcaattagagattataaat 14645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 11154027 - 11153979
Alignment:
Q  122 atatagtaatttaaaaagattggtaataaactcaattagagcttataaa 170  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  11154027 atatactaatctaaaaagattggtaacaaactcaattagagcttataaa 11153979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 15706918 - 15706862
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataa 169  Q
    |||||| |||||||||||| | |||||||| |||| |||||||||||||||||||||    
T  15706918 ctagagaacatatagtaatgtgaaaagatttgtaacaaactcaattagagcttataa 15706862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 357
Target Start/End: Complemental strand, 11153890 - 11153820
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtctctattcatcata 357  Q
    |||||||||||||||| ||| ||||||| |||  | |||||||||||| | ||||||||||||||||||||    
T  11153890 gagagatttcaccgtatgaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcata 11153820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 14645810 - 14645763
Alignment:
Q  304 ggaaatcatcaattcggcaaactagaggtaaggagggagtctctattca 352  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  14645810 ggaagtcatcaattcggaaaactagaggtaagg-gggagtctctattca 14645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 18552412 - 18552479
Alignment:
Q  354 catacgtgtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 422  Q
    |||||| |||||||||||| | ||||||| |||||||| |||| |||||||| ||||||||||| ||||    
T  18552412 catacgggtagtgaagagtgt-tgttttatattgttttgcatgttcttttaacgaattcatgtttaatt 18552479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 23974388 - 23974315
Alignment:
Q  91 aaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataa 169  Q
    ||||||||||||||||||||||     ||| |||||||||| ||||| ||| ||||| ||||||||||| | |||||||    
T  23974388 aaagattagtaacaaacctaga-----ggaaatatagtaatctaaaacgatcggtaacaaactcaattacaacttataa 23974315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 9548880 - 9548761
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggc--aaactagaggtaa 334  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||  ||  ||||||||||||||||||||||||||||||  ||  ||||||||| |||    
T  9548880 ctagggttgtggagagaagagacaaggaggcatagcgagaa-aaacgta--gagagatttcaccgtaggaaatcatcaatttcgcaaaaactagagataa 9548784  T
Q  335 ggagggagtctctattcatcata 357  Q
    || |||||||||| |||||||||    
T  9548783 ggggggagtctctgttcatcata 9548761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 19566644 - 19566791
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagag 118  Q
    ||||||||||  ||||| |||||||||  ||||||||||| ||||| ||||||||||||||  |||  | ||||  |||||||||||| ||    |||||    
T  19566644 gtgtgaatagaaaggtggtgtagttaagagaagaatagtaacaaaaattagaggtacaaatgataatttgaaaat-attagtaacaaaact----tagag 19566738  T
Q  119 gacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||    
T  19566739 gacatatagtaatctaaaaagattggtaacaaactcaattagagattataaat 19566791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 19893173 - 19893060
Alignment:
Q  53 aatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaa 151  Q
    |||||||||||||| ||||||| || ||||||| || |||| |||||||||||||      ||||||||||||||||||| ||||||||||||||| |||    
T  19893173 aatagtatcaaaatatagaggtgcagatagtaatctgaaaa-gattagtaacaaa-----tctagaggacatatagtaatctaaaaagattggtaacaaa 19893080  T
Q  152 ctcaattagagcttataaat 171  Q
    ||||||||||||||||||||    
T  19893079 ctcaattagagcttataaat 19893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 9549057 - 9548970
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||| ||||| || ||| |||||||||    
T  9549057 gtgtgaatagctaggtgatgtagttacaagaagaatagtaacaaaatctagaggtacaaatagtaatctaaagaa-attggtaacaaac 9548970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 12980339 - 12980414
Alignment:
Q  91 aaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||     ||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||    
T  12980339 aaagattagtaacaaacctagac-----gacatatagaaatctaaaaagattgataacaaactcaattagagcttataaat 12980414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 13571024 - 13570925
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    ||||||| || |||||||||||||||||||||||| | | ||||||||||| ||||| ||||||||||| |||||||  || |||||||| |||||||||    
T  13571024 agcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtacagatagtaa-ttagaaaagatttgtaacaaac 13570926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 13566476 - 13566378
Alignment:
Q  10 gcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaacc 108  Q
    |||||| || |||||||||||||||||||||||| | | ||||||||||| ||||| ||||||||||| |||||||  || |||||||| ||||||||||    
T  13566476 gcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtacagatagtaa-ttagaaaagatttgtaacaaacc 13566378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 19768908 - 19768957
Alignment:
Q  122 atatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  19768908 atatagtaatctaaaaagattggtaacaaactcaattagagcttataaat 19768957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 19564999 - 19565110
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagag 118  Q
    ||||||||||  ||||| ||||||||   ||||||| ||| ||||| ||||||||||||||||||| || |||| ||||||||||||||||||     ||    
T  19564999 gtgtgaatagaaaggtggtgtagttaggagaagaatggtaacaaaaattagaggtacaaatagtaatctgaaaa-gattagtaacaaacctag-----ag 19565092  T
Q  119 gacatatagtaatttaaa 136  Q
    ||||||||||||| ||||    
T  19565093 gacatatagtaatctaaa 19565110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 13575559 - 13575483
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaa 84  Q
    ||||||| || |||||||||||||||||||||||| | | ||||||||||| ||||| ||||||||||  |||||||    
T  13575559 agcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtactgatagtaa 13575483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 13578098 - 13578022
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaa 84  Q
    ||||||| || |||||||||||||||||||||||| | | ||||||||||| ||||| ||||||||||  |||||||    
T  13578098 agcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtactgatagtaa 13578022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 19769046 - 19769117
Alignment:
Q  288 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaa-ggagggagtctctattcatcata 357  Q
    |||||||||||||||||||| ||||| |||||  | |||||||||||| || ||||||||||||||||||||    
T  19769046 gagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatggggggagtctctattcatcata 19769117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 9548998 - 9548951
Alignment:
Q  124 atagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||| |||| | |||||||| |||||||||||||||||||||||    
T  9548998 atagtaatctaaagaaattggtaacaaactcaattagagcttataaat 9548951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 1921 - 1859
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctatt 350  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  1921 gagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggggagtctctatt 1859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 2051 - 1994
Alignment:
Q  114 tagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||| |||||||||| ||||||||||||||| ||||||||||| | |||||||||    
T  2051 tagaggaaatatagtaatctaaaaagattggtaacaaactcaattataacttataaat 1994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 12786504 - 12786428
Alignment:
Q  90 aaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||      ||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  12786504 aaaagattagtaacaaacctagaa-----gacatatagtaatataaaaagattggtaacaaactcaattagagcttataaat 12786428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 12786364 - 12786243
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaa- 334  Q
    |||||||||||||||||| |||||||| || ||||  |||| ||  ||   |||||||||||||||||||| ||||| |||||  ||||||||||||||     
T  12786364 ctagggttgtggagagaaaaggcaaggtggcatagaaagaagaac-ctgaagagagatttcaccgtaggaattcatcaaattctccaaactagaggtaat 12786266  T
Q  335 ggagggagtctctattcatcata 357  Q
    || ||||||||||||||||||||    
T  12786265 ggggggagtctctattcatcata 12786243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 9131527 - 9131584
Alignment:
Q  114 tagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  9131527 tagaggacatagagtaatctaaaacgattggtaacaaactcaattaaagcttataaat 9131584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 18513786 - 18513906
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||| |||||||||||||| | ||||||||| |||||  || |||  ||||||||| | | |||||||||||||| ||||  |||||| |||||||    
T  18513786 ctagggttatggagagaagaggccaagaggaatagtgagaa-gaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaag 18513884  T
Q  336 gagggagtctctattcatcata 357  Q
    | || |||||||||||| ||||    
T  18513885 ggggaagtctctattcaccata 18513906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 23632181 - 23632244
Alignment:
Q  288 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaaggagggagtctctatt 350  Q
    |||||||||||||||||||| ||||| ||||||  ||||||||||||||| |||||| ||||||    
T  23632181 gagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaaggggggagtttctatt 23632244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 362
Target Start/End: Original strand, 9131648 - 9131772
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||| ||||||||||| | || |||||||||| ||||  ||||||  |||||||||    ||||||||||||||| ||||  ||||| ||||||||    
T  9131648 ctagggttatggagagaagaagtaaagaggaatagcaagaa-gaatctaaagagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggtaag 9131746  T
Q  336 gagggagtctctattcatcatacgtgt 362  Q
    || |||||||||||||| |||| ||||    
T  9131747 ga-ggagtctctattcaccataagtgt 9131772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 12484114 - 12484161
Alignment:
Q  124 atagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||| | |||||||| |||| |||||||||||||||||||||||    
T  12484114 atagtaatctgaaaagattagtaacaaactcaattagagcttataaat 12484161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 423
Target Start/End: Original strand, 18513958 - 18513992
Alignment:
Q  389 ttttcatgatcttttaatgaattcatgttaaattt 423  Q
    |||||||||||||||||| ||||||||||||||||    
T  18513958 ttttcatgatcttttaataaattcatgttaaattt 18513992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 18513665 - 18513722
Alignment:
Q  114 tagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||| |||||| || ||||| |||||| ||||||  ||||||||    
T  18513665 tagaggacatatagtaatctaaaaaaatcggtaacaaactcgattagaagttataaat 18513722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 35456 - 35571
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||||||||||||| ||||||| ||| ||||| |||  ||   ||  |||||||||||||||||||| ||||||| |||| |||||||||||||||    
T  35456 ctagggttgtggagagaaaaggcaagaaggcatagcaagaggaacg-tagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaag 35554  T
Q  336 gagggagtctctattca 352  Q
    | |||||||||||||||    
T  35555 gggggagtctctattca 35571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 11508467 - 11508613
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagag 118  Q
    ||||||||||| ||| | ||||| || || || ||||||| ||| || ||||||| || ||||||| || |||| |||||||||||||||| ||     |    
T  11508467 gtgtgaatagcaaggcggtgtagctacagaaataatagtaacaatatatagaggtgcagatagtaatctgaaaa-gattagtaacaaacctgga-----g 11508560  T
Q  119 gacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||||||||    
T  11508561 gacatatagtaatctaaaaaaattggtaacaaactcaattagagcttataaat 11508613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 32945463 - 32945355
Alignment:
Q  246 tggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggagggagtc 344  Q
    |||||||||||||||| |||||||||| |||| || |   | ||||||||||| |||||||||||||||| ||||  ||||||||||||||| ||||||     
T  32945463 tggagagaagaggcaaagaggaatagccagaagaact---tagagagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt- 32945368  T
Q  345 tctattcatcata 357  Q
    | |||||||||||    
T  32945367 tatattcatcata 32945355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 423
Target Start/End: Complemental strand, 3311014 - 3310877
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatcatacgtgtag--tgaagagtttgtgttttacat 385  Q
    ||||||||  || ||||||| ||||||||||| |||||||||||||||| |||||||||||||||| ||| | || |  ||||| ||||||||||| | |    
T  3311014 gagagattcaacagtaggaagtcatcaattcgacaaactagaggtaagg-gggagtctctattcat-ataagggttgtatgaagggtttgtgtttttctt 3310917  T
Q  386 --tgtttttcatgatcttttaatgaattcatgttaaattt 423  Q
      |  |||||| |||||||||||||||| |||||||||||    
T  3310916 ccttgttttcacgatcttttaatgaatttatgttaaattt 3310877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 3312715 - 3312651
Alignment:
Q  288 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcat 353  Q
    ||||||||  |||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||    
T  3312715 gagagattcaaccgtaggaagtcatcaattcggcaaactagagataagg-gggagtctctattcat 3312651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 18147481 - 18147530
Alignment:
Q  122 atatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  18147481 atatagtaatctaaaaagattggtaacaaactcaattagagcttataaat 18147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 427
Target Start/End: Original strand, 21859820 - 21859885
Alignment:
Q  361 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgt 427  Q
    |||||||||||||| |||||  |||||||||||||||| ||||||||||||  ||||||||||||||    
T  21859820 gtagtgaagagtttttgtttc-cattgtttttcatgattttttaatgaatttgtgttaaatttgtgt 21859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 3311254 - 3311162
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaacctaga 112  Q
    ||||||||||| | |||||||||||| || |||||||||| |||||| |||| |||||||||||||  |  ||| |||||||||||||||||||    
T  3311254 gtgtgaatagcaaagtgatgtagttacagaaagaatagtagcaaaatctagaagtacaaatagtaa-tttgaaatgattagtaacaaacctaga 3311162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 18147571 - 18147691
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaa- 334  Q
    ||||||||||||||| ||||| |||| ||| | | |||||| || ||||  |||||||||| ||||||||| ||||||| |||  | ||||||||||||     
T  18147571 ctagggttgtggagaaaagagtcaag-aggcacaccgagaagaa-tctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggtaat 18147668  T
Q  335 ggagggagtctctattcatcata 357  Q
    || ||||||||||||||||||||    
T  18147669 ggggggagtctctattcatcata 18147691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 32945627 - 32945499
Alignment:
Q  38 tgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagaggacatatagtaatttaaa 136  Q
    |||||||| || || ||||||| |||||| ||||||| ||||||||||  | |||| |||||||||||||      |||||||||||||| |||  ||||    
T  32945627 tgtagttacagaaataatagtaacaaaatatagaggtgcaaatagtaatatgaaaa-gattagtaacaaa-----tctagaggacatatattaacataaa 32945534  T
Q  137 aagattggtaataaactcaattagagcttataaat 171  Q
    ||||||| ||| |||||| |||| |||||||||||    
T  32945533 aagattgataacaaactctattaaagcttataaat 32945499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 33721532 - 33721432
Alignment:
Q  66 ttagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaac-tcaattagagct 164  Q
    ||||||||||||||| ||| || |||| |||||||||||||| || | ||     || |||||||| |||||||||||||||||||| | ||||||||||    
T  33721532 ttagaggtacaaataataatctcaaaa-gattagtaacaaacttataata-----cacatagtaatctaaaaagattggtaataaacttaaattagagct 33721439  T
Q  165 tataaat 171  Q
    |||||||    
T  33721438 tataaat 33721432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 3312974 - 3312834
Alignment:
Q  20 gtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaat-tagaggtacaaatagtaacctaaaaaagattagtaacaaacctagactagag 118  Q
    ||||||||||| |  ||||||||||| || |||||||||| |||||| |||| |||||||||||||  |  ||| |||||||||||||| ||||     |    
T  3312974 gtgtgaatagcaaattgatgtagttacagaaagaatagtagcaaaatctagaagtacaaatagtaa-tttgaaatgattagtaacaaacataga----gg 3312880  T
Q  119 gacatatagtaatttaaaaagattggtaataaactcaattagagct 164  Q
     | | |||||||| |||||||||| |||| |||||||| |||||||    
T  3312879 taaacatagtaatctaaaaagattagtaacaaactcaaatagagct 3312834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 13695920 - 13695873
Alignment:
Q  298 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtct 345  Q
    ||||||| || |||||||||||||||||||||||||||| | ||||||    
T  13695920 accgtagaaattcatcaattcggcaaactagaggtaaggggagagtct 13695873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 13696128 - 13696071
Alignment:
Q  298 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatca 355  Q
    ||||||| || ||||||||||||||||||||||| |||| | |||||| | |||||||    
T  13696128 accgtagaaattcatcaattcggcaaactagagggaaggggagagtctatcttcatca 13696071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 34707354 - 34707315
Alignment:
Q  67 tagaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  34707354 tagaggtacaaatagtaacct-gaaaagattagtaacaaac 34707315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 20263454 - 20263607
Alignment:
Q  9 agcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaa-ttagaggtacaaatagtaacctaaaaaagattagtaacaaac 107  Q
    ||||||| || |||||||||||||||||||||||||| | |||| |||  | ||||| |||||||||||||||||||  |  ||||||||||||||||||    
T  20263454 agcagagggaggtgtgaatagctaggtgatgtagttagaagaagtatataaacaaaatttagaggtacaaatagtaa-tttgaaaagattagtaacaaac 20263552  T
Q  108 ctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
         ||| |||||    |||||| || |||||||||||| |||||||||||||||| ||||||    
T  20263553 -----ctaaaggac----agtaatctataaagattggtaacaaactcaattagagctaataaat 20263607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 16093771 - 16093714
Alignment:
Q  114 tagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  16093771 tagaggacatatagtaatttaaaaagataggtaacaaactcaattagagtttataaat 16093714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 16093651 - 16093532
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaagg 336  Q
    |||||||| ||||||||| |||||| || |||||||||||  ||  |||  |||||||||||| |||| || |||||| ||  ||||||||||||||||     
T  16093651 ctagggttatggagagaaaaggcaaagatgaatagcgagaggaac-ctagagagagatttcactgtagaaattcatcacttttgcaaactagaggtaaga 16093553  T
Q  337 agggagtctctattcatcata 357  Q
     ||||||||||||||| ||||    
T  16093552 ggggagtctctattcaccata 16093532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 27386908 - 27387002
Alignment:
Q  241 ggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 335  Q
    |||||||||||||||||||||||||| || |||||||  || |||  ||||||||||||||||| ||||||| || ||||  ||||||||||||||    
T  27386908 ggttgtggagagaagaggcaaggaggcatggcgagaa-gaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 32623568 - 32623664
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatcaattcggc-aaactagaggta 333  Q
    |||||||| ||||  |||||||||| |||||||| |||||| || ||||  ||||||||||||||||| ||||||||||||  || ||||||||||||    
T  32623568 ctagggttatggaatgaagaggcaaagaggaataacgagaagaa-tctagagagagatttcaccgtagaaaatcatcaattttgcaaaactagaggta 32623664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 32623428 - 32623504
Alignment:
Q  90 aaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||      ||||||||||||| |||||||||| || | ||||| ||||||| |||||||||    
T  32623428 aaaagattagtaacaaacctagat-----gacatatagtaatctaaaaagattagtgacaaacttaattagaccttataaat 32623504  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 16093466 - 16093423
Alignment:
Q  384 attgtttttcatgatcttttaatgaattcatgttaaatttgtgt 427  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  16093466 attgtttttcatgatcttttaatgaaaccatgttaaattcgtgt 16093423  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 20180923 - 20180863
Alignment:
Q  361 gtagtgaagagtttgtgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 422  Q
    ||||||||||| || ||||||  ||||  ||||||||| |||||||||||||||||||||||    
T  20180923 gtagtgaagagcttttgttttctattgggtttcatgat-ttttaatgaattcatgttaaatt 20180863  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 20263671 - 20263751
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttc-accgtaggaaatcatcaatt 317  Q
    ||||||||||||||| ||||| |||||||| | | ||||||  ||||||  |||||||||| |||||||||| |||||||||    
T  20263671 ctagggttgtggagaaaagagtcaaggaggcacaccgagaa-gaatctaaagagagatttctaccgtaggaattcatcaatt 20263751  T

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Target: scaffold0094 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 48321 - 48262
Alignment:
Q  298 accgtaggaaatcatcaattcggcaaactagaggtaaggagggagtctctattcatcata 357  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||    
T  48321 accgtaggaattcatcaattcggaaaactagaggtaaggggggagtctctattcaccata 48262  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 183070 - 182966
Alignment:
Q  237 ctagggttgtggagagaagaggcaaggaggaatagcgagaataaatctatggagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaag 335  Q
    |||||||||||||||||||||||||||||| |||| ||||  ||   ||   |||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  183070 ctagggttgtggagagaagaggcaaggaggcatagggagaggaacg-tagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaag 182972  T
Q  336 gaggga 341  Q
    | ||||    
T  182971 ggggga 182966  T

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Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 171272 - 171348
Alignment:
Q  90 aaaagattagtaacaaacctagactagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||||||||||||||||||||     | |||||||| ||| |||||| |||||||| |||||||||||||| ||||||||    
T  171272 aaaagattagtaacaaacctaga-----gaacatatagaaatctaaaaaaattggtaacaaactcaattagagattataaat 171348  T

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Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 171480 - 171527
Alignment:
Q  304 ggaaatcatcaattcggcaaactagaggtaaggagggagtctctattca 352  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  171480 ggaagtcatcaattcggaaaactagaggtaagg-gggagtctctattca 171527  T

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Target: scaffold0978 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 3053 - 2995
Alignment:
Q  113 ctagaggacatatagtaatttaaaaagattggtaataaactcaattagagcttataaat 171  Q
    |||||| |||||||||||| | |||||| | |||| |||||||||||||||||||||||    
T  3053 ctagagaacatatagtaatctgaaaagagttgtaacaaactcaattagagcttataaat 2995  T

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Target: scaffold0815 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 1311 - 1279
Alignment:
Q  384 attgtttttcatgatcttttaatgaattcatgt 416  Q
    |||||||||||||||||||||||||||| ||||    
T  1311 attgtttttcatgatcttttaatgaattaatgt 1279  T

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