View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_150 (Length: 204)
Name: NF3582_low_150
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_150 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 4656280 - 4656410
Alignment:
| Q |
66 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatcttcactcatctctca |
165 |
Q |
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| T |
4656280 |
gtacaacaacacatcatgtgagagttttgctggtttctacttgctccaccctgtcaatgcccaaaatctataagctccaatcatcttcactcatctctca |
4656379 |
T |
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| Q |
166 |
acctcttaaacttttggcctttgatacttct |
196 |
Q |
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| T |
4656380 |
acctcttaaacttttggcttttgaaacttct |
4656410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 1038932 - 1038802
Alignment:
| Q |
66 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatcttcactcatctctca |
165 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| |
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| T |
1038932 |
gtacaacaacacatcatgtgaaagttttgctggtttctaccttctccaccctgtcaatgaccaaaatctacaagctccaatcatctttactcatttctca |
1038833 |
T |
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| Q |
166 |
acctcttaaacttttggcctttgatacttct |
196 |
Q |
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| T |
1038832 |
acttcttaaacttttggcttttgaaacttct |
1038802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 1045838 - 1045708
Alignment:
| Q |
66 |
gtacaacaacacatcatgtgagagttttgctggtttctactttctccaccctgtcaatgcccaaaatctataagctccaatcatcttcactcatctctca |
165 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||| |
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| T |
1045838 |
gtacaacaacacatcatgtgaaagttttgctggtttctaccttctccaccctgtcaatgaccaaaatctacaagctccaatcatctttactcatttctca |
1045739 |
T |
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| Q |
166 |
acctcttaaacttttggcctttgatacttct |
196 |
Q |
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|| ||||||||||||||| ||||| |||||| |
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| T |
1045738 |
acttcttaaacttttggcttttgaaacttct |
1045708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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