View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_16 (Length: 523)

Name: NF3582_low_16
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_16
NF3582_low_16
[»] chr5 (2 HSPs)
chr5 (27-506)||(16969934-16970416)
chr5 (197-252)||(16639591-16639646)
[»] chr7 (2 HSPs)
chr7 (14-453)||(47396909-47397348)
chr7 (26-449)||(38159461-38159884)
[»] chr4 (3 HSPs)
chr4 (14-453)||(3240966-3241400)
chr4 (149-252)||(36753329-36753431)
chr4 (224-292)||(20113684-20113752)
[»] chr6 (7 HSPs)
chr6 (211-453)||(24702423-24702661)
chr6 (7-66)||(24702711-24702770)
chr6 (297-379)||(8962793-8962875)
chr6 (125-250)||(8962621-8962746)
chr6 (125-250)||(8956611-8956736)
chr6 (297-379)||(8956482-8956564)
chr6 (14-110)||(34876415-34876511)
[»] chr8 (2 HSPs)
chr8 (57-297)||(535597-535836)
chr8 (211-252)||(9811999-9812040)
[»] chr1 (5 HSPs)
chr1 (125-335)||(26487394-26487604)
chr1 (167-252)||(34820742-34820827)
chr1 (26-187)||(1862522-1862683)
chr1 (125-385)||(44403840-44404100)
chr1 (19-78)||(1899012-1899071)
[»] chr3 (1 HSPs)
chr3 (26-250)||(41171115-41171339)
[»] chr2 (2 HSPs)
chr2 (20-250)||(9041983-9042210)
chr2 (167-294)||(36353818-36353945)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 27 - 506
Target Start/End: Complemental strand, 16970416 - 16969934
Alignment:
Q  27 aaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgt---agtctccttcattaccaattgtattgt 123  Q
    ||||||| ||||| |||||||||||||   ||||||||| ||||||||||||||||  ||||| ||||||   |||||| |||||||| || || | |      
T  16970416 aaatagaacaatcattagcaagatacacacgaatgagttataggagatttgcataacggtggagccttgttgtagtctcattcattactaactgcactac 16970317  T
Q  124 gtgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatattt 223  Q
     ||||||||||| ||||| |||||||| |||||||||| |||||||||||| || |||| ||   |||||||||||||||||||||||||||||||||||    
T  16970316 atgaagagagtcagagtaacatatgaggtttctatatcatgcatcccaacaaaaatttatactggtcaatagagcttgaatttcagcatgtaggatattt 16970217  T
Q  224 gagatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttc 323  Q
    |||||||||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16970216 gagatccctacactaccaaagaaaccaagttgaaaattttcatcatgtttaaaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttc 16970117  T
Q  324 tatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagtatgaacacaagtatccgagaagttagtatcaaaagccta 423  Q
    |||||||||||| ||| ||||||||||||||||| || | ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  16970116 tatcaacattgagaaccatgatgtcctcatccctatattgccaactcaccatccttgaagtatgaacatgagtatccgagaagttagtatc-aaagccta 16970018  T
Q  424 gtgagcaagatgatactggg-aaaaaatagtgtaacatggtttatttggtttgtgtnnnnnnngaaaacaattaggggaaattg 506  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  16970017 gtgagcaagatgatactgggaaaaaaatagtgtaacatggtttatttggtttgtgtaaaaaaaaaaaacaattaggggaaattg 16969934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 16639591 - 16639646
Alignment:
Q  197 gcttgaatttcagcatgtaggatatttgagatccctacactaccaaagaaaccaag 252  Q
    |||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  16639591 gcttgaatctcaccatgtaggatattcgagatccccacactaccaaagaaaccaag 16639646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 47396909 - 47397348
Alignment:
Q  14 atatcatgaatcgaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattacca 113  Q
    |||| |||||| ||||||||||| |||||||||||||||||  |||||||||||| || ||||||||||| ||||||| | |||||||||||||||| ||    
T  47396909 atatgatgaattgaaatagaccagtccttagcaagatacattcgaatgagttctaagatatttgcataatggtggaacttggtagtctccttcattatca 47397008  T
Q  114 attgtattgtgtgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatg 213  Q
    |||||| ||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  47397009 attgtactgcatgaagagagtcggagtaacatatgagctttctatatcctgcatcccaacacaactttacgctagtcaatagagcttgaatttcagcatg 47397108  T
Q  214 taggatatttgagatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtc 313  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||  |||  ||||||||||||||||| | |||||| || |||||||    
T  47397109 taggatatttgagatacctacactaccaaagaaaccaagctgaaaactttcatcgtgcttacgaattagaccaccataacatgcctttcctggatttgtc 47397208  T
Q  314 aacgcgcttctatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagtatgaacacaagtatccgagaagttagtat 413  Q
    |||||||||| ||||||||||| ||  |||  ||||||||||| ||  |  |||||||||||||||| |||| ||  || ||||||   | ||||||||     
T  47397209 aacgcgcttccatcaacattgagaatcatggcgtcctcatccccgtgttgtcaactcaccatccttggagtaagagtacgagtatctagggagttagtac 47397308  T
Q  414 caaaagcctagtgagcaagatgatactgggaaaaaatagt 453  Q
    |||||||||  ||||||||||||| || ||||||||||||    
T  47397309 caaaagcctgctgagcaagatgatgcttggaaaaaatagt 47397348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 26 - 449
Target Start/End: Original strand, 38159461 - 38159884
Alignment:
Q  26 gaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattaccaattgtattgtgt 125  Q
    ||||||||||||||||||||||||| || | |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| || |||  ||    
T  38159461 gaaatagaccaatccttagcaagatgcacccgaatgagttctaagagatttgcataatggtggaaccttgtagtctccttcattatcaactgcattacgt 38159560  T
Q  126 gaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttga 225  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||    
T  38159561 gaagagagtcgaagtagcatatgagctttttatatcctgcatcccaacacaattttataccagtcaatagagcttgaatttcagcatgtatgatatttga 38159660  T
Q  226 gatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttc--ttgaatttgtcaacgcgcttc 323  Q
    ||||||| |||||||||| ||| ||| ||||||| || ||| ||  |||  ||||||||||||||||||| ||||||  ||| |||||||||||||||||    
T  38159661 gatccctgcactaccaaataaatcaacttgaaaacttccatcgtgcttacgaattagaccaccataacctgcctttctattgtatttgtcaacgcgcttc 38159760  T
Q  324 tatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagtatgaacacaagtatccgagaagttagtatcaaaagccta 423  Q
     ||||||||||| ||  ||| |||||||||| |  |  | |||||||||||||||||  ||||||  || ||||||| || |||||||| |||||||||     
T  38159761 catcaacattgagaatcatggtgtcctcatctccatgttgccaactcaccatccttg--gtatgagtacgagtatccaaggagttagtaccaaaagcctg 38159858  T
Q  424 gtgagcaagatgatactgggaaaaaa 449  Q
    |||||||||||||| ||| |||||||    
T  38159859 gtgagcaagatgatgctgagaaaaaa 38159884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 14 - 453
Target Start/End: Original strand, 3240966 - 3241400
Alignment:
Q  14 atatcatgaatcgaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattacca 113  Q
    |||| ||||||| || |||||| ||||||||||||||| | || ||| |||||||  ||||||||||||| |||||||||| ||||||| ||||| ||||    
T  3240966 atatgatgaatcaaagtagaccgatccttagcaagatagacctaaataagttctaaaagatttgcataatggtggaacctt-tagtctcattcatcacca 3241064  T
Q  114 attgtattgtgtgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatg 213  Q
    | |  ||     ||||||| ||||||||||||||||||||||||||||| |||  | || ||||||||||||||   |||||||||||||||||| ||||    
T  3241065 actacat-----gaagagaatcggagtagcatatgagctttctatatcccgcaatctaaaacaactttacaccagctaatagagcttgaatttcaacatg 3241159  T
Q  214 taggatatttgagatccctaca--ctaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttg 311  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||||| || ||| ||  ||| ||||||||||| |||||| | ||||||||| | |||    
T  3241160 taggaaatttgagattcctacacgctaccaaagaaaccaagttgaaaacttccatcgtgcttacaaattagaccatcataacttgcctttcttgga-ttg 3241258  T
Q  312 tcaacgcgcttctatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagtatgaacacaagtatccgagaagttagt 411  Q
    ||||||| |||| ||||| ||||| ||  ||||| ||||||||||  | || ||||||||||||||||| |||||||  || ||||||| || |||||||    
T  3241259 tcaacgcacttccatcaatattgagaatcatgatatcctcatccccatgctgccaactcaccatccttggagtatgagtacgagtatccaaggagttagt 3241358  T
Q  412 atcaaaagcctagtgagcaagatgatactgggaaaaaatagt 453  Q
    | |||||||||  |||||||||||||  ||||||||||||||    
T  3241359 accaaaagcctgatgagcaagatgatgttgggaaaaaatagt 3241400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 36753431 - 36753329
Alignment:
Q  149 agctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttgagatccctacactaccaaagaaac 248  Q
    ||||||||||| ||| | |||||||| ||||| |||||| || | |   ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||    
T  36753431 agctttctataacctacctcccaacataactt-acaccagtcgaaaatacttgaatctcaacatgtaggatattcgagatccccacactaccaaagaaac 36753333  T
Q  249 caag 252  Q
    ||||    
T  36753332 caag 36753329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 20113752 - 20113684
Alignment:
Q  224 gagatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataa 292  Q
    |||||| | |||| |||||||||||||||||| ||||| ||||  ||  || |||||||||||||||||    
T  20113752 gagatctccacacgaccaaagaaaccaagttgcaaattgtcatcatacctacaaattagaccaccataa 20113684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 211 - 453
Target Start/End: Complemental strand, 24702661 - 24702423
Alignment:
Q  211 atgtaggatatttgagatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaattt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||  ||    |  ||||||| ||||||| |||||| || ||||    
T  24702661 atgtaggatatttgagatccctacactaccaaagaaaccaagttgaaaacttccatcgtgctt----acgagaccacaataacctgcctttcctggattt 24702566  T
Q  311 gtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagtatgaacacaagtatccgagaagttag 410  Q
    ||||||||||||| ||||||||||| ||| ||| ||||||| ||||  | |  ||||||||||||||||| |||||||     ||| |||  | ||||||    
T  24702565 gtcaacgcgcttccatcaacattgagaaccatggtgtcctcgtccccatgccgccaactcaccatccttggagtatgagtttgagtctccagggagttag 24702466  T
Q  411 tatcaaaagcctagtgagcaagatgatactgggaaaaaatagt 453  Q
    || ||||||||| |||||||||||||| |||||||||||||||    
T  24702465 taccaaaagcctggtgagcaagatgatgctgggaaaaaatagt 24702423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 24702770 - 24702711
Alignment:
Q  7 tcgaagaatatcatgaatcgaaatagaccaatccttagcaagatacatctgaatgagttc 66  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24702770 tcgaaggatatcatgaatcgaaatagaccaatccatagcaagatacatctgaatgagttc 24702711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 379
Target Start/End: Original strand, 8962793 - 8962875
Alignment:
Q  297 cctttcttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatcctt 379  Q
    |||||||||||||  |||| || |||| |||||||||||||| |||||||||||| ||||  | || ||||||||||||||||    
T  8962793 cctttcttgaattgttcaaagcacttccatcaacattgaaaattatgatgtcctcgtccccatgctgccaactcaccatcctt 8962875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 8962621 - 8962746
Alignment:
Q  125 tgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttg 224  Q
    ||||||||||||||| | ||||| ||||||||||| | ||  |||||||| ||||||| || | |||| |  |||||||| | || |||||  |||||||    
T  8962621 tgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcaacaacgcttgaatctaagtatgtaaaatatttg 8962720  T
Q  225 agatccctacactaccaaagaaacca 250  Q
    ||||||  || |||||||||||||||    
T  8962721 agatccacacgctaccaaagaaacca 8962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 8956736 - 8956611
Alignment:
Q  125 tgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttg 224  Q
    ||||||||||||||| | ||||| ||||||||||| | ||  |||||||| ||||||| || | || | |  |||||||| | || |||||  |||||||    
T  8956736 tgaagagagtcggagaaacatataagctttctataacttgtctcccaacataactttatactattcgacaacgcttgaatctaagtatgtaaaatatttg 8956637  T
Q  225 agatccctacactaccaaagaaacca 250  Q
    ||||||  || |||||||||||||||    
T  8956636 agatccacacgctaccaaagaaacca 8956611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 379
Target Start/End: Complemental strand, 8956564 - 8956482
Alignment:
Q  297 cctttcttgaatttgtcaacgcgcttctatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatcctt 379  Q
    |||||||||||||  |||| || |||| ||||||||||| || ||||||||||||  |||  | || ||||||||||||||||    
T  8956564 cctttcttgaattgttcaaagcacttccatcaacattgagaattatgatgtcctcgcccccatgctgccaactcaccatcctt 8956482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 34876415 - 34876511
Alignment:
Q  14 atatcatgaatcgaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcatta 110  Q
    |||| |||||| ||||||||||||| ||||| |||||  ||| | |||||||  |  ||||||| ||||| |||||||||  |||||||||| ||||    
T  34876415 atatgatgaatagaaatagaccaattcttagtaagattgatcggcatgagtttcaaaagatttgtataatggtggaacctgatagtctccttgatta 34876511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 297
Target Start/End: Original strand, 535597 - 535836
Alignment:
Q  57 gaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattaccaattgtattgtgtgaagagagtcggagtagcatatgagctttct 156  Q
    |||||||||||| |||||||| ||||| ||| |||||||  |||||||||||||| |  || |     |||||| ||||| | ||||| |||| ||||||    
T  535597 gaatgagttctaagagatttgaataatggtgaaaccttgcggtctccttcattactagctgcaccacatgaagaaagtcgaaatagcacatgaactttct 535696  T
Q  157 atatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttgagatcc-ctacactaccaaagaaaccaagttg 255  Q
    |||||||   |||||||||||  |||||| | |||||   | |||||||||| ||||||  |||||||||||||  ||||||| |||||||||||||||     
T  535697 atatcctatctcccaacacaatattacacaagtcaat--tgtttgaatttcaacatgtatcatatttgagatcctatacactaacaaagaaaccaagtta 535794  T
Q  256 aaaattttcattgtatttagaaattagaccaccataacctac 297  Q
    |||| || |||  |  |||  |||||||||||||||||||||    
T  535795 aaaacttccatgatgcttacgaattagaccaccataacctac 535836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 9811999 - 9812040
Alignment:
Q  211 atgtaggatatttgagatccctacactaccaaagaaaccaag 252  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  9811999 atgtaggatatttgagatccccacacaaccaaagaaaccaag 9812040  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 125 - 335
Target Start/End: Complemental strand, 26487604 - 26487394
Alignment:
Q  125 tgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttg 224  Q
    ||||||||||| ||||| || || || ||| |||| ||||| |||||||||||||| |  |||||| | ||||||||||| |||||||| ||||||||      
T  26487604 tgaagagagtcagagtaacacataagttttttatagcctgcctcccaacacaacttaattccaatccagagagcttgaatctcagcatgaaggatattaa 26487505  T
Q  225 agatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttct 324  Q
    ||||||| |||||  | || ||||||||||| |||||  | | ||  |||  |||||||||||||||||| || |||| |  ||||| ||| || ||||     
T  26487504 agatccccacactttcgaaaaaaccaagttggaaattgccgtcgtgcttactaattagaccaccataacccacttttcctagatttgccaaagcacttcc 26487405  T
Q  325 atcaacattga 335  Q
    |||||||||||    
T  26487404 atcaacattga 26487394  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 34820742 - 34820827
Alignment:
Q  167 tcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttgagatccctacactaccaaagaaaccaag 252  Q
    |||||||| ||||||| ||||||||| | | ||||||| |||||||||||||||||  |||||||| |||||| ||| ||| ||||    
T  34820742 tcccaacataactttataccaatcaacaaaacttgaatctcagcatgtaggatattcaagatccctccactactaaaaaaatcaag 34820827  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 1862522 - 1862683
Alignment:
Q  26 gaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattaccaattgtattgtgt 125  Q
    |||||| | |||||||||||||||||  | || |||||||| | ||||||||||||||  || ||||| |   | |||||||| ||||| ||||   | |    
T  1862522 gaaataaatcaatccttagcaagataattttggatgagttccaagagatttgcataatgatgaaacctcgagatgtccttcatcaccaactgtaccatat 1862621  T
Q  126 gaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacacca 187  Q
    |||||||||||||| | || || ||||||||||| | ||  |||||||| ||||||| ||||    
T  1862622 gaagagagtcggagaaacacataagctttctataacatgtctcccaacataactttagacca 1862683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 385
Target Start/End: Original strand, 44403840 - 44404100
Alignment:
Q  125 tgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcag-catgtaggatattt 223  Q
    |||||||||||  ||||||| || || ||| ||||  |||| ||||||||||| || |  |||||| | |||||| |||| || | |||| ||||||||     
T  44403840 tgaagagagtcatagtagcacataagttttttatagtctgcctcccaacacaatttgattccaatccagagagctagaatctctggcatgaaggatatta 44403939  T
Q  224 gagatccctacactaccaaagaaaccaagttgaaaattttcattgtatttagaaattagaccaccataacctacctttcttgaatttgtcaacgcgcttc 323  Q
    |||||||| | | | | ||| |||||||||||||| ||  ||| ||  |||  |||||||||||||| |||  | |||  |||||||||||| || ||||    
T  44403940 gagatccccatatttcgaaa-aaaccaagttgaaagttgccatcgtgcttactaattagaccaccatcacccgctttttctgaatttgtcaaagcacttc 44404038  T
Q  324 tatcaacattgaaaactatgatgtcctcatccctgtactaccaactcaccatccttgaagta 385  Q
     |||||||||||  |  ||| |||||||||| |  | || ||||||||||||||||| ||||    
T  44404039 catcaacattgaggatcatggtgtcctcatctccatgctgccaactcaccatccttggagta 44404100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 1899012 - 1899071
Alignment:
Q  19 atgaatcgaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgc 78  Q
    |||||||||||| |||||  ||||||||||||| | | |||||||||||| |||||||||    
T  1899012 atgaatcgaaatggaccataccttagcaagatagacccgaatgagttctaagagatttgc 1899071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 41171339 - 41171115
Alignment:
Q  26 gaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattaccaattgtattgtgt 125  Q
    |||||| | |||||||||||||||||  |||| |||||||| | ||||||||||||||  || ||||| |   | || ||||| ||||| ||||     |    
T  41171339 gaaataaatcaatccttagcaagataattctggatgagttccaagagatttgcataatgatgaaacctcgagatgtctttcatcaccaactgtaccacat 41171240  T
Q  126 gaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttga 225  Q
    |||||||||||||| | || || ||||||||||| ||||  | |||||| ||||||| |||| |||| |  |||||||| ||||||||||  |||||  |    
T  41171239 gaagagagtcggagaaacacataagctttctataacctgttttccaacataactttataccagtcaaaaacgcttgaatctcagcatgtaaaatattcaa 41171140  T
Q  226 gatccctacactaccaaagaaacca 250  Q
    |||||| | ||||||||||||||||    
T  41171139 gatccccatactaccaaagaaacca 41171115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 9042210 - 9041983
Alignment:
Q  20 tgaatcgaaatagaccaatccttagcaagatacatctgaatgagttctaggagatttgcataattgtggaaccttgtagtctccttcattaccaattgta 119  Q
    ||||| |||||| ||||||||||| |||||||  |||| |||||||| | ||||||||||||||  || ||||| |   | |||||||| ||||| | ||    
T  9042210 tgaatagaaataaaccaatccttatcaagataattctggatgagttccaagagatttgcataatgatgaaacctcgagatgtccttcatcaccaactcta 9042111  T
Q  120 ttgtgtgaagagagtcggagtagcatatgagctttctatatcctgcatcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggat 219  Q
         |||| ||||||| || | || || ||||||||||| ||||  |||||||| ||||||| |||||||||    | |||||| ||||||||||  ||    
T  9042110 ccacatgaatagagtcgaagaaacacataagctttctataacctgtctcccaacataactttataccaatcaa---cgtttgaatctcagcatgtaaaat 9042014  T
Q  220 atttgagatccctacactaccaaagaaacca 250  Q
    |||||||||||| || |||||||| ||||||    
T  9042013 atttgagatccccacgctaccaaataaacca 9041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 36353818 - 36353945
Alignment:
Q  167 tcccaacacaactttacaccaatcaatagagcttgaatttcagcatgtaggatatttgagatccctacactaccaaagaaaccaagttgaaaattttcat 266  Q
    |||||||||||||| |  |||| | | ||||| | ||| |||||||| |||||||| |||||||| || |||||||||||| ||| ||||||| | ||||    
T  36353818 tcccaacacaacttgattccaaactaaagagcctaaatctcagcatgaaggatattagagatccccactctaccaaagaaatcaaattgaaaactgtcat 36353917  T
Q  267 tgtatttagaaattagaccaccataacc 294  Q
     ||  |||  ||||||||||||||||||    
T  36353918 agtgcttacgaattagaccaccataacc 36353945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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