View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_18 (Length: 518)
Name: NF3582_low_18
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_18 |
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| [»] scaffold0009 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 28284343 - 28283846
Alignment:
| Q |
1 |
aagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttagccagagcatggatgacttatcctaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28284343 |
aagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttagccagagcatggatgacttatcctaaa |
28284244 |
T |
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| Q |
101 |
attatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatttgacaagtaaattccttaattcaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28284243 |
attatctttgcttactcaactatgagtaatgttgttgatcctaaagggtgggataacaccatgcaccctgaatttgacaagtaaattccttaattcaact |
28284144 |
T |
|
| Q |
201 |
ttgcagttctgcattttaatgatatatattcatccattagaatatgttagtgt--atatatatcattttaggttaaatatatttttaacattaatacatt |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28284143 |
ttgcagttctgcatttttatgatatatattcatccattagaatatgttagtgtgtatatatatcattttaggttaaatatatttttaacattaatacatt |
28284044 |
T |
|
| Q |
299 |
atgctattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagc |
398 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28284043 |
atgttattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagc |
28283944 |
T |
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| Q |
399 |
agaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgtggcttgaagagttttgtc |
496 |
Q |
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| T |
28283943 |
agaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgtggcttgaagagttttgtc |
28283846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 306 - 478
Target Start/End: Original strand, 174316 - 174488
Alignment:
| Q |
306 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||| |
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| T |
174316 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggtt |
174415 |
T |
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| Q |
406 |
aaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgt |
478 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
174416 |
aaacctttcattacacttggaatgattcaagcatctaaatggctccttcctcctccaaaagtctaattaatgt |
174488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 306 - 478
Target Start/End: Original strand, 179829 - 180001
Alignment:
| Q |
306 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaactaagtgcagcagaggtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||| ||||||| || |||||||||| |
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| T |
179829 |
tcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcctaaagggcgtgcaagtgttgcaaagcaactaactgaagcagaggtt |
179928 |
T |
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| Q |
406 |
aaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgt |
478 |
Q |
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| T |
179929 |
aaacctttcattacacttggaatgattcaagcatctaaatggctccttcctcctccaaaagtctaattaatgt |
180001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 173420 - 173597
Alignment:
| Q |
7 |
atcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttagccagagcatggatgacttatcctaaaattatc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
173420 |
atcagatgctgatttatactcatttgtgcattgtgatattactggaactggatcttccactttcttagctagggcatggatgacttatcccaaaattatc |
173519 |
T |
|
| Q |
107 |
tttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatttgacaagtaa |
184 |
Q |
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| T |
173520 |
tatgcttactcaactatgaccaatgttgttaatcccaaagggtgggataacgccatgcaccctgaatttgacaagtaa |
173597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 178933 - 179110
Alignment:
| Q |
7 |
atcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttagccagagcatggatgacttatcctaaaattatc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
178933 |
atcagatgctgatttatactcatttgtgcattgtgatattactggaactggatcttccactttcttagctagggcatggatgacttatcccaaaattatc |
179032 |
T |
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| Q |
107 |
tttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatttgacaagtaa |
184 |
Q |
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| ||||||||||||||||| ||||||||| |||||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
179033 |
tatgcttactcaactatgaccaatgttgttaatcccaaagggtgggataacgccatgcaccctgaatttgacaagtaa |
179110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 31114408 - 31114225
Alignment:
| Q |
1 |
aagtgtatcagatgctgatttatactcatttgtgcattgtgatgttactggaactggatctaccactttcttagccagagcatggatgacttatcctaaa |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
31114408 |
aagtgcatcagatgctgatttatactcatttgtgcattgtgatattactggaactggaactactactttcttagctagagcatggatgacttatcctaaa |
31114309 |
T |
|
| Q |
101 |
attatctttgcttactcaactatgagtaatgttgttgatcccaaaggatgggataacaccttgcaccctgaatttgacaagtaa |
184 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
31114308 |
attatctatgcttactcaactatgaccaatgttgttcatccaaaaggatgggataatggcatgcaccctgaatttgacaagtaa |
31114225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 288 - 478
Target Start/End: Complemental strand, 31114154 - 31113964
Alignment:
| Q |
288 |
attaatacattatgctattcacagaacttcatactttggagaatatcagaacacaggaccaaagtcagatcccaaaggacgtgcaactgtcggaaaacaa |
387 |
Q |
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||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||| || | || ||| ||| |
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| T |
31114154 |
attaatacattatcttatctgcagaacatcatactttggagaatatcaaaacacaggaccaaaatcagatccgaaagggcgtgtaagtatcacaaagcaa |
31114055 |
T |
|
| Q |
388 |
ctaagtgcagcagaggttaaacctttcattacgcttggaatgattcaaggatctaaatggctccttcctcctccaaaagtctaattaatgt |
478 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31114054 |
ctaagtgaagcagaggttaaacctttcattacacttggaatgattcaaggatcaaaatggctccttcctcctccaaaagtctaattaatgt |
31113964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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