View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_20 (Length: 492)
Name: NF3582_low_20
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 40 - 468
Target Start/End: Complemental strand, 9037987 - 9037555
Alignment:
| Q |
40 |
gaaatcaattatatccatattggagcaagttccatgcgctttccattgatcatcccaaaaagcaatgtttattagtcgagacttttcataaactaataaa |
139 |
Q |
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| T |
9037987 |
gaaatcaattatatccatattggagcaacttccatgcgctttccattgctcatcccaaaaagcaatgtttattagtcgagacttttcataaactaataaa |
9037888 |
T |
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| Q |
140 |
tccggccacactttatcaagttcttccttcaagtccaacggaaactgattgaataaaacaaaacaaatagttaattttcaaatcatataaaaataatgat |
239 |
Q |
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| T |
9037887 |
tccggccacactttatcaagttcttccttcaagtccaacggaaactgattgaataaaacaaaacaaaaagttaattttcaaatcatataaaaataatgat |
9037788 |
T |
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| Q |
240 |
aaacagtgaacgaagaaaataaatacacctacattgccaatatctattgtcttttggttggttttatctaaacaatcacgtggatcagatataactctgt |
339 |
Q |
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| T |
9037787 |
aaacaatgaacgaagaaaataaatacacctacattgccaatatctattgtcttttggttggttttatctaaacaaccacgtggatcagatataactctgt |
9037688 |
T |
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| Q |
340 |
tggcaggccacaatccatgcataacgaattctgttggtagaggttgaatgtccttactacatttcttagtttggcaaaatgtcttcggccatctctg--- |
436 |
Q |
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| T |
9037687 |
tagcaggccacaatccatgcataacgaattctgttggtagaggttgaatgtccttactacatttaacagtttggcaaaatgtctttggccatctctggat |
9037588 |
T |
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| Q |
437 |
-gaccatcataaaatgctcgaaatgggtgggag |
468 |
Q |
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| T |
9037587 |
cgaccatcataaaatgctcaaaatgggtgggag |
9037555 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 581076 - 581002
Alignment:
| Q |
194 |
aaaacaaaacaaatagttaa-ttttcaaatcatataaaaataatgataaacagtgaacgaagaaaataaatacac |
267 |
Q |
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| T |
581076 |
aaaacaaaacaaaaaattaacttttcaaatcatataaaaattatgataaacaactaacgaacaaaataaatacac |
581002 |
T |
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