View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_25 (Length: 463)

Name: NF3582_low_25
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_25
NF3582_low_25
[»] chr4 (10 HSPs)
chr4 (1-461)||(37241905-37242353)
chr4 (185-372)||(37245017-37245198)
chr4 (279-372)||(37232850-37232943)
chr4 (279-372)||(37253099-37253192)
chr4 (199-255)||(37232772-37232828)
chr4 (407-443)||(37241890-37241926)
chr4 (387-443)||(37245129-37245185)
chr4 (201-258)||(37237696-37237753)
chr4 (133-189)||(37232817-37232873)
chr4 (69-161)||(37253094-37253186)
[»] scaffold0902 (3 HSPs)
scaffold0902 (185-443)||(3298-3550)
scaffold0902 (199-255)||(3297-3353)
scaffold0902 (189-254)||(3574-3639)
[»] scaffold1652 (4 HSPs)
scaffold1652 (198-443)||(338-571)
scaffold1652 (189-264)||(170-245)
scaffold1652 (215-269)||(277-331)
scaffold1652 (384-442)||(335-393)
[»] scaffold1176 (3 HSPs)
scaffold1176 (191-443)||(112-352)
scaffold1176 (323-439)||(1355-1468)
scaffold1176 (382-444)||(114-176)
[»] chr6 (7 HSPs)
chr6 (201-358)||(14351555-14351712)
chr6 (323-443)||(14248242-14248359)
chr6 (296-443)||(14254049-14254190)
chr6 (214-443)||(14316777-14316994)
chr6 (191-270)||(14248376-14248455)
chr6 (82-177)||(14351715-14351810)
chr6 (203-255)||(14248241-14248293)
[»] scaffold1801 (2 HSPs)
scaffold1801 (323-443)||(122-239)
scaffold1801 (202-255)||(187-240)
[»] scaffold0002 (1 HSPs)
scaffold0002 (191-270)||(165271-165350)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 37242353 - 37241905
Alignment:
Q  1 acctttgctcgatctctatcatcatctcccgattacactccatctcctgcgggatctcccttggctatctcaccggcggtgtcttctcccgttcctttga 100  Q
    |||||||| |||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37242353 acctttgcacgatctctatcatcatctcctgttgccactccatctcctgcgggatctcccttggctatctcaccggcggtatcttctcccgttcctttga 37242254  T
Q  101 tgaacgctgcatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgcttctcctgttgc 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  37242253 tgaacgctccatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggttctcc------------tgcttctcctgttgc 37242166  T
Q  201 cgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatct 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  37242165 cgctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggtggcatct 37242066  T
Q  301 tctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgcta 400  Q
    |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37242065 tctcccgtacctgtaacgagcagtccttctccttcaccgtccgccatcaactctccaccatctcctcctcctcacgcctcccctgctgccgctcctgcta 37241966  T
Q  401 ttactacatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctgctcctcc 461  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37241965 ttactccatcgtcaatctctactcctccaactaaagcaccatcgtcgatctctactcctcc 37241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 185 - 372
Target Start/End: Complemental strand, 37245198 - 37245017
Alignment:
Q  185 ctgcttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaa 284  Q
    |||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||      ||||||    
T  37245198 ctgcttctcccgttgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatcaccagcgatttctccctc------cgctaa 37245105  T
Q  285 ctcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 372  Q
    |||| |||| |||||| ||||||| |||   | |||   ||||||||| ||||||||| ||| ||||||||||||||| |||||||||    
T  37245104 ctcaacggcggcatctgctcccgtgcctgcgaagagcattccttctccatcaccgtccaccaacaactctccaccatctcctcctcct 37245017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 37232943 - 37232850
Alignment:
Q  279 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 372  Q
    |||| |||||||||| |||||| |||||| |||| | | || |  ||| |||||||| || ||||||||||||||||||||||| |||||||||    
T  37232943 cgctcactcaccggctgcatctcctcccgcacctgtgaagaattctccatctccttcgccatccgccatcaactctccaccatctcctcctcct 37232850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 37253192 - 37253099
Alignment:
Q  279 cgctaactcaccggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcct 372  Q
    |||| |||||||||| |||||| ||||| ||||| | | ||  | ||| ||||||||||| || |||||||||||||||||||| |||||||||    
T  37253192 cgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcct 37253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 37232828 - 37232772
Alignment:
Q  199 gccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 255  Q
    ||||||||||| ||||||||||| |||||||| ||||||||  || |||||||||||    
T  37232828 gccgctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca 37232772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 443
Target Start/End: Complemental strand, 37241926 - 37241890
Alignment:
Q  407 catcgtcaatctctactcctccaactaaagcaccatc 443  Q
    ||||||| |||||||||||||||||||||||||||||    
T  37241926 catcgtcgatctctactcctccaactaaagcaccatc 37241890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 37245185 - 37245129
Alignment:
Q  387 tgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 443  Q
    ||||||||||||| | ||| ||||||| ||||||||||||||| || ||||||||||    
T  37245185 tgccgctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccatc 37245129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 37237753 - 37237696
Alignment:
Q  201 cgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacct 258  Q
    ||||||||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||    
T  37237753 cgctcctgctgttactccatcatccatctctactcctccttctgaagcaccttcacct 37237696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 37232873 - 37232817
Alignment:
Q  133 aactatccaacatctcctcctcctgcttcctttggttctcccgctttcgctcctgct 189  Q
    |||| |||| ||||||||||||||||||||| |||||| |||||   ||||||||||    
T  37232873 aactctccaccatctcctcctcctgcttcctctggttcacccgccgccgctcctgct 37232817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 37253186 - 37253094
Alignment:
Q  69 ctcaccggcggtgtcttctcccgttcctttgatgaacgctgcatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttc 161  Q
    |||||||||||  ||| ||||| | ||| ||| ||||||| ||||||||||||| |  ||  | |||| |||| |||||||||||||||||||    
T  37253186 ctcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttcaccttcagccatcaactctccaccatctcctcctcctgcttc 37253094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 185 - 443
Target Start/End: Complemental strand, 3550 - 3298
Alignment:
Q  185 ctgcttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaa 284  Q
    ||||| ||| || |||| ||||||| || ||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||      |||||    
T  3550 ctgctcctcttgctgccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctccctcc------gctaa 3457  T
Q  285 ctcaccggcagc---atcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcc 381  Q
    ||||  |||| |   |||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||   |||||||||| || |||    
T  3456 ctcaatggcatctatatctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat---ctcctcctcatgcttcc 3360  T
Q  382 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 443  Q
    || || ||||||||||| |||||| ||||| | |||||||| |||||| |||||||||||||    
T  3359 ccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatc 3298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 3353 - 3297
Alignment:
Q  199 gccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 255  Q
    |||||||||||  ||||||||||| ||||||| || ||||||||| |||||||||||    
T  3353 gccgctcctgccattactccatcggcgatctctacccctccatctaaagcaccatca 3297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 3639 - 3574
Alignment:
Q  189 ttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatc 254  Q
    |||||| | ||| |||||||| || ||||||||||||||||| |  |||||| |||||||||||||    
T  3639 ttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatc 3574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 198 - 443
Target Start/End: Original strand, 338 - 571
Alignment:
Q  198 tgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagca 297  Q
    |||||||||||| || |||||||||||||| || ||||||||||||||||||||||  ||||||||| |||||||      |||||||||| |||  |||    
T  338 tgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccatagcctgcgatttctccctc------cgctaactcaacggtggca 431  T
Q  298 tcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctg 397  Q
    ||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || ||||| || ||| ||||||    
T  432 tctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcccccgcagccactcctg 525  T
Q  398 ctattactacatcgtcaatctctactcctccaactaaagcaccatc 443  Q
    |||||||| ||||| | |||||||| || ||| |||||||||||||    
T  526 ctattactccatcggcgatctctaccccaccatctaaagcaccatc 571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 170 - 245
Alignment:
Q  189 ttctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgatt 264  Q
    |||||| | ||| |||||||| ||  |||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  170 ttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacgatt 245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 277 - 331
Alignment:
Q  215 ctccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctcc 269  Q
    |||||||||||||||| || |||||||||||||||||||| ||| ||||| ||||    
T  277 ctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcc 331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 335 - 393
Alignment:
Q  384 tgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccat 442  Q
    |||||||||||||||| | ||| ||||||| || |||||||||||| || |||||||||    
T  335 tgctgccgctcctgctgtgactccatcgtcgatatctactcctccatctcaagcaccat 393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 191 - 443
Target Start/End: Original strand, 112 - 352
Alignment:
Q  191 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcacc 290  Q
    |||||| ||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||       ||||||||| |    
T  112 ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctccctc------agctaactcaac 205  T
Q  291 ggcagcatcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgcc 390  Q
     || || ||| |||| | |||| | | |||  |||||||||||||||| || ||||||||||||  |||||      ||||||| || ||||| || |||    
T  206 cgcggcgtctgctcctgaacctgtgaagagcagtccttctccttcaccatctgccatcaactctagaccat------ctcctcaagcttcccccgcagcc 299  T
Q  391 gctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatc 443  Q
     | |||||||||||| ||||||| |||||||| |||||| |||||||||||||    
T  300 acccctgctattactccatcgtccatctctacccctccatctaaagcaccatc 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 439
Target Start/End: Original strand, 1355 - 1468
Alignment:
Q  323 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctcta- 421  Q
    ||||||||||||||||||  |||||||||| ||||||||   |||||||||| || ||||| ||  | ||||| |||| |||| |||||||||||||||     
T  1355 gtccttctccttcaccgtgtgccatcaactgtccaccat---ctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctac 1450  T
Q  422 ctcctccaactaaagcac 439  Q
    | |||||| |||||||||    
T  1451 cccctccatctaaagcac 1468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 114 - 176
Alignment:
Q  382 cctgctgccgctcctgctattactacatcgtcaatctctactcctccaactaaagcaccatcg 444  Q
    |||||||| ||||||||| | ||| |||| || ||||||||||||||| || |||||||||||    
T  114 cctgctgctgctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcg 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 201 - 358
Target Start/End: Complemental strand, 14351712 - 14351555
Alignment:
Q  201 cgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatct 300  Q
    ||||||||| ||||||||||| ||  |||| ||||| ||||||||||||||||| ||| ||||| ||| ||| ||| |||||||||||||||    ||||    
T  14351712 cgctcctgctgttactccatcatcagtctctactccaccatctcaagcaccatcgcctacgatttctctctcaaccggcgctaactcaccggtgatatct 14351613  T
Q  301 tctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccac 358  Q
    |||||| ||||| ||| |||| |||||||||||||| | ||| |||||||||||||||    
T  14351612 tctcccatacctgtaaagagtagtccttctccttcatcatccaccatcaactctccac 14351555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 443
Target Start/End: Complemental strand, 14248359 - 14248242
Alignment:
Q  323 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 422  Q
    ||||||||||||||||||| ||||||||||||||| |||   |||||||||| || | ||| || ||| ||||||| |||||| ||||| | ||||||||    
T  14248359 gtccttctccttcaccgtctgccatcaactctccatcat---ctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctac 14248263  T
Q  423 tcctccaactaaagcaccatc 443  Q
     |||||| |||||||||||||    
T  14248262 ccctccatctaaagcaccatc 14248242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 14254190 - 14254049
Alignment:
Q  296 catcttctcccgtacctataacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcc 395  Q
    ||||| ||||||||||| | | |||  ||||||||||||||||||| |||||||||||||||||||      ||||||| || || ||||| ||  ||||    
T  14254190 catctgctcccgtacctgtgaagagcagtccttctccttcaccgtctgccatcaactctccaccat------ctcctcaagcttcacctgcagctactcc 14254097  T
Q  396 tgctattactacatcgtcaatctctactcctccaactaaagcaccatc 443  Q
    |||||||||| ||||||| |||||||  |||||| |||||| ||||||    
T  14254096 tgctattactccatcgtcgatctctatccctccatctaaagtaccatc 14254049  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 443
Target Start/End: Complemental strand, 14316994 - 14316777
Alignment:
Q  214 actccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccctccaccagcgctaactcaccggcagcatcttctcccgtaccta 313  Q
    |||||||| |||||||| |||||||| ||||||||||| || |||||||||  ||||  || ||||  ||||||| |   ||||||| |||||||||||     
T  14316994 actccatcatcgatctctactcctccgtctcaagcaccctcgcctgcgatt--tccc--catcagc--taactcaac---agcatctgctcccgtacctg 14316904  T
Q  314 taacgagtggtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtc 413  Q
    | | |||  ||||||||  ||||||||| ||||||||||||||| |||   |||||||||| || ||||| || ||| |||| || || ||| |||| ||    
T  14316903 tgaagagcagtccttctatttcaccgtctgccatcaactctccatcat---ctcctcctcaagcttcccccgcagccactccggccatcactccatcatc 14316807  T
Q  414 aatctctactcctccaactaaagcaccatc 443  Q
     |||||||| |||||  |||||||||||||    
T  14316806 gatctctacccctccttctaaagcaccatc 14316777  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 14248455 - 14248376
Alignment:
Q  191 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccc 270  Q
    |||||| ||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  14248455 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctccc 14248376  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 14351810 - 14351715
Alignment:
Q  82 tcttctcccgttcctttgatgaacgctgcatctccttcaccgttcgcagttaactatccaacatctcctcctcctgcttcctttggttctcccgct 177  Q
    ||||||||||||||| | ||||| ||| |||||||||||| ||| ||  |||||| ||| |||||  |||||| ||||||||||||||||||||||    
T  14351810 tcttctcccgttcctgttatgaatgctccatctccttcactgtttgccattaactctccgacatcctctcctcatgcttcctttggttctcccgct 14351715  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 14248293 - 14248241
Alignment:
Q  203 ctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 255  Q
    |||||||| ||||||||||| ||||||| || ||||||||| |||||||||||    
T  14248293 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca 14248241  T

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Target: scaffold1801 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 443
Target Start/End: Original strand, 122 - 239
Alignment:
Q  323 gtccttctccttcaccgtccgccatcaactctccaccatcgcctcctcctcacgcctcccctgctgccgctcctgctattactacatcgtcaatctctac 422  Q
    ||||||||||||||||||| |||||||||||||||| ||   |||||||||| || || || || || |||||||| |||||| ||||||| ||||||||    
T  122 gtccttctccttcaccgtctgccatcaactctccacaat---ctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctac 218  T
Q  423 tcctccaactaaagcaccatc 443  Q
     |||||| |||||||| ||||    
T  219 ccctccatctaaagcatcatc 239  T

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Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 187 - 240
Alignment:
Q  202 gctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatca 255  Q
    ||||||||  ||||||||||||||||||| || ||||||||| ||||| |||||    
T  187 gctcctgccattactccatcgtcgatctctacccctccatctaaagcatcatca 240  T

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Target: scaffold0002 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 165271 - 165350
Alignment:
Q  191 ctcctgttgccgctcctgcagttactccatcgtcgatctcaactcctccatctcaagcaccatcacctgcgattgctccc 270  Q
    |||||| ||| |||||||| || ||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  165271 ctcctgctgctgctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctccc 165350  T

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