View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_26 (Length: 462)
Name: NF3582_low_26
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 47028273 - 47027843
Alignment:
| Q |
18 |
gaaaagattaatgcttcgctgcgccttatcattcacgatctaggagctgaaccccctgcggcaaaaatttgctgctccatctacaatcacaatcacagaa |
117 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47028273 |
gaaaagattaatgcttcactgcgccttatcattcactatctaggagctgaaccccctgcggcaaaaatttgctgctccatctacaatcaca------gaa |
47028180 |
T |
|
| Q |
118 |
gtagaaacttaccaactttaaagaagacaaaaatagtttatagttatttaatttaatacatatatgaaaggatcttcatctccttaccttaaagagtgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47028179 |
gtagaaacttaccaactttaaagaagacaaaaatagtttatagttatttaatttaatacatatatgaaaggatcttcatctccttaccttaaagagtgtc |
47028080 |
T |
|
| Q |
218 |
tcaaacttggttttcactaaggtatactcctgctttatgtcttgcaggcttttaaagcacctgaaatgc--nnnnnnnnnnncatgtatattttttccta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47028079 |
tcaaacttggttttcactaaggtatactcctgctttatgtcttgcaggcttttaaagcacctgaaatgcaacaaaaaaaaaacatgtatattttttccta |
47027980 |
T |
|
| Q |
316 |
tcagaatatgaacattgtattgccaaagagttttcaaaacatacagaaaattagacatgatattttgaagcttacccttctatgtttttctcctcacagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47027979 |
tcagaatatgaacattgtattgccaaagagttttcaaaacataaagaaaattagacatgatattttgaagcttacccttctatgtttttctcctcacagt |
47027880 |
T |
|
| Q |
416 |
agtttttgaaggcaatacagactctctgaactctctg |
452 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
47027879 |
agtttttgaaggcaatacagactctctgaactctctg |
47027843 |
T |
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