View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_28 (Length: 460)
Name: NF3582_low_28
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 54573638 - 54573459
Alignment:
| Q |
1 |
atgagaatatgaatttgtagcaaaagtgaatttaattctatctatattctcaaatgaagcataaatagttagggtaaaataatttgaatagtaaaatggt |
100 |
Q |
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| T |
54573638 |
atgagaatatgaatttgtagcgaaagtgaatttaattctatctatattctcaaatgaagcataaatagttagggtaaaataatttgaatagtaaaatggt |
54573539 |
T |
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| Q |
101 |
gagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa |
180 |
Q |
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| T |
54573538 |
gagatatgtgactgttgagagatgaaacatattctcttatgcatagacactaaaaatatcagaatttcacacactatcaa |
54573459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 55156920 - 55156734
Alignment:
| Q |
1 |
atgagaatatgaatttgtagcaaaagtgaatttaattctatctat---attctcaaatgaagcataaatagttagggtaaaataatttgaatagtaaaat |
97 |
Q |
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| T |
55156920 |
atgagaatatgaatttgtagtgaaagtgaatttaattctatttattatattctcaaatgaagcaaaaatagttgggataaaataatttgaatgataaaat |
55156821 |
T |
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| Q |
98 |
ggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat |
184 |
Q |
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| T |
55156820 |
ggtgagatatgtgactgttgagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat |
55156734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 265 - 372
Target Start/End: Complemental strand, 55156653 - 55156546
Alignment:
| Q |
265 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
364 |
Q |
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| T |
55156653 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
55156554 |
T |
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| Q |
365 |
tgactcca |
372 |
Q |
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|||||||| |
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| T |
55156553 |
tgactcca |
55156546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 372
Target Start/End: Complemental strand, 54573386 - 54573279
Alignment:
| Q |
265 |
attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat |
364 |
Q |
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| T |
54573386 |
attgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtctttagattatccacttcccat |
54573287 |
T |
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| Q |
365 |
tgactcca |
372 |
Q |
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| T |
54573286 |
tgactcca |
54573279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 54573244 - 54573205
Alignment:
| Q |
407 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
446 |
Q |
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| T |
54573244 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
54573205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 446
Target Start/End: Complemental strand, 55156511 - 55156472
Alignment:
| Q |
407 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
446 |
Q |
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| T |
55156511 |
ggttcatactccttcaatggagaaagcttcttcgtctctg |
55156472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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