View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_34 (Length: 435)

Name: NF3582_low_34
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_34
NF3582_low_34
[»] chr5 (3 HSPs)
chr5 (19-422)||(13109372-13109778)
chr5 (19-418)||(13039378-13039780)
chr5 (325-406)||(13417066-13417146)
[»] chr2 (4 HSPs)
chr2 (299-406)||(24447923-24448033)
chr2 (361-415)||(7670385-7670439)
chr2 (377-414)||(1529732-1529769)
chr2 (304-411)||(16567767-16567877)
[»] chr8 (5 HSPs)
chr8 (299-415)||(22573078-22573197)
chr8 (299-406)||(40028765-40028875)
chr8 (374-422)||(556800-556848)
chr8 (378-412)||(32889976-32890010)
chr8 (362-414)||(11066492-11066544)
[»] chr4 (3 HSPs)
chr4 (299-414)||(22202869-22202987)
chr4 (374-415)||(34666430-34666471)
chr4 (376-414)||(26183677-26183715)
[»] chr7 (1 HSPs)
chr7 (300-412)||(10026381-10026496)
[»] chr1 (1 HSPs)
chr1 (299-415)||(45792731-45792849)
[»] chr6 (3 HSPs)
chr6 (338-422)||(8573834-8573918)
chr6 (338-422)||(8547481-8547565)
chr6 (379-411)||(2565887-2565919)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 13109372 - 13109778
Alignment:
Q  19 ccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatttgtggttctctaccttgattg 118  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13109372 ccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatttgtggttccctaccttgattg 13109471  T
Q  119 aaatagataacatcttttccttcttttatcctatataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttgaagtta 218  Q
    | ||| |||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13109472 agataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttgaagtta 13109571  T
Q  219 aaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccgtgttgactttctttaaaagtccgtttggtgtgcaggataa 318  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  13109572 aaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccgtgttgattttctttaaaagcccgtttggtgcgcaggataa 13109671  T
Q  319 agagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 415  Q
    ||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  13109672 agagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccatagaaaatgataagtttaacatatttctaatcatatcctat 13109771  T
Q  416 ccaccct 422  Q
    |||||||    
T  13109772 ccaccct 13109778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 13039378 - 13039780
Alignment:
Q  19 ccatggacattcacaataatgtttttattcgaaaacacatgaattgtatttccaactctaaaatctagttcatctcatttgtggttctctaccttgattg 118  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13039378 ccatggacattcacaataatgtttttatcccaaaacacgtgaattgtatttccaactctaaaatctagttcatctcatttgtggttccctaccttgattg 13039477  T
Q  119 aaatagataacatcttttccttcttttatcctatataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttgaagtta 218  Q
    | ||| |||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13039478 agataaataacatcttcttcttcttttctcctgtataaagagtatatttcacttgaagataaaccactacaatgatttctcaaactctcatttgaagtta 13039577  T
Q  219 aaccactccaaaaatttctacatctcgaaaatcagattaaaaattatgatgaaacttccgtgttgactttctttaaaagtccgtttggtgtgcaggataa 318  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||    
T  13039578 aaccactccaaaaatttctacatgtcgaaaagcagactaaaaattatgatgaaacttccgtgttgattttctttaaaagcccgtttggtgcgcaggataa 13039677  T
Q  319 agagac---atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 415  Q
    ||||||   |||||||||| |||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||    
T  13039678 agagacaaaatatgattagtatatcctatcctgtcttaatccattgtttggtgcgcccataggaaatgataagtttaacatatttctaattatatcctat 13039777  T
Q  416 cca 418  Q
    |||    
T  13039778 cca 13039780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 13417146 - 13417066
Alignment:
Q  325 atatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatc 406  Q
    ||||||||| | |||| ||||||| |||||||| | |||||||||  | | || ||| ||||||||||||||||||||||||    
T  13417146 atatgattaaattattatatcctgactcaatccgc-gtttggtgcaccaacagaaaaagataagtttaacctatttctaatc 13417066  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 24447923 - 24448033
Alignment:
Q  299 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 395  Q
    |||||||||| ||||||||| |||||||   ||||||| |||||| ||||||||||||||||  ||||||||| | |||||||||||||||||||||| |    
T  24447923 ccgtttggtgcgcaggataaggagacatgatatgattaaaatattttatcctgtctcaatccgttgtttggtgtgcccataggaaatgataagtttaatc 24448022  T
Q  396 tatttctaatc 406  Q
    ||||| |||||    
T  24448023 tatttgtaatc 24448033  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 7670385 - 7670439
Alignment:
Q  361 gtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctat 415  Q
    |||||||||  | |||| |||||||||||||||||| ||||||||| ||||||||    
T  7670385 gtttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctat 7670439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 1529769 - 1529732
Alignment:
Q  377 ggaaatgataagtttaacctatttctaatcatatccta 414  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  1529769 ggaaatgataagtttaacttatttttaatcatatccta 1529732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 16567877 - 16567767
Alignment:
Q  304 tggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctattt 400  Q
    ||||| ||||||||| |||||||   |||||| || |||  |||| ||||| |||||  ||||||||||  | | || ||| ||||||||||||||||||    
T  16567877 tggtgcgcaggataaggagacatgatatgatttgattatcatatcatgtcttaatccgttgtttggtgcaccaacagaaaaggataagtttaacctattt 16567778  T
Q  401 ctaatcatatc 411  Q
    |||||| ||||    
T  16567777 ctaatcctatc 16567767  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 22573078 - 22573197
Alignment:
Q  299 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 395  Q
    |||||||||| ||| ||||| |||||||   ||||||||||||| |||||||| ||||||||  ||||||||||  | | ||||||||||||||||||||    
T  22573078 ccgtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacc 22573177  T
Q  396 tatttctaatcatatcctat 415  Q
    | ||||||||| ||||||||    
T  22573178 tgtttctaatcctatcctat 22573197  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 406
Target Start/End: Original strand, 40028765 - 40028875
Alignment:
Q  299 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 395  Q
    |||||||||| ||||||||| ||||||   |||||||| |||||  ||||||| |||||||   ||||||||||| | | |||||||||||| |||||||    
T  40028765 ccgtttggtgcgcaggataaggagacaggatatgattaaaatatcatatcctgcctcaatctgttgtttggtgcgccaacaggaaatgataactttaacc 40028864  T
Q  396 tatttctaatc 406  Q
    | |||||||||    
T  40028865 tttttctaatc 40028875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 556800 - 556848
Alignment:
Q  374 ataggaaatgataagtttaacctatttctaatcatatcctatccaccct 422  Q
    |||| ||||||||| || |||||||||||||||||||||||| ||||||    
T  556800 atagaaaatgataaattaaacctatttctaatcatatcctattcaccct 556848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 32889976 - 32890010
Alignment:
Q  378 gaaatgataagtttaacctatttctaatcatatcc 412  Q
    ||||||||||||||||||||||||||||| |||||    
T  32889976 gaaatgataagtttaacctatttctaatcctatcc 32890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 11066492 - 11066544
Alignment:
Q  362 tttggtgcgtccataggaaatgataagtttaacctatttctaatcatatccta 414  Q
    ||||||| ||| |||||||| ||||| || ||||||||||||||| |||||||    
T  11066492 tttggtgtgtcaataggaaaggataacttaaacctatttctaatcctatccta 11066544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 414
Target Start/End: Original strand, 22202869 - 22202987
Alignment:
Q  299 ccgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 395  Q
    |||||||||| ||||||||| ||||||   |||||| ||||||| ||||| |||| ||||||  |||||| |||| ||||| ||||||||||||||||||    
T  22202869 ccgtttggtgcgcaggataaggagacaggatatgatcagaatatcctatcgtgtcccaatccgttgtttgttgcgaccatatgaaatgataagtttaacc 22202968  T
Q  396 tatttctaatcatatccta 414  Q
    ||||| ||||| |||||||    
T  22202969 tatttttaatcctatccta 22202987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 34666430 - 34666471
Alignment:
Q  374 ataggaaatgataagtttaacctatttctaatcatatcctat 415  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  34666430 ataggaaatgataacttaaacctatttctaatcatatcctat 34666471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 26183677 - 26183715
Alignment:
Q  376 aggaaatgataagtttaacctatttctaatcatatccta 414  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  26183677 aggaaatgataagtttaacatatttctaatcctatccta 26183715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 412
Target Start/End: Original strand, 10026381 - 10026496
Alignment:
Q  300 cgtttggtgtgcaggataaagagaca---tatgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacct 396  Q
    ||||||||| ||||||||| ||||||   |||||||||| |||  |||| ||||| |||||  ||||||||||  | | | |||||||||||||||||||    
T  10026381 cgtttggtgcgcaggataaggagacaggatatgattagattatcatatcttgtcttaatcccttgtttggtgcaccaacatgaaatgataagtttaacct 10026480  T
Q  397 atttctaatcatatcc 412  Q
    ||||||||||||||||    
T  10026481 atttctaatcatatcc 10026496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 415
Target Start/End: Complemental strand, 45792849 - 45792731
Alignment:
Q  299 ccgtttggtgtgcaggataaagagacat---atgattagaatattctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacc 395  Q
    |||||||||||||||||||| |||||||   ||||||||||||| |||||||| ||||||||  | ||||||||  | | || ||||||||||||||||     
T  45792849 ccgtttggtgtgcaggataaggagacatgatatgattagaatatcctatcctgactcaatccgtt-tttggtgcaccaacagaaaatgataagtttaaca 45792751  T
Q  396 tatttctaatcatatcctat 415  Q
    | ||||||||| ||||||||    
T  45792750 tgtttctaatcctatcctat 45792731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 8573918 - 8573834
Alignment:
Q  338 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccct 422  Q
    |||||||||||| ||||||| | |||||| || || |||||||||||||| || ||||||||||||||| |||| ||| ||||||    
T  8573918 attctatcctgtttcaatcctccgtttggagcatcaataggaaatgataacttaaacctatttctaatcttatcatattcaccct 8573834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 8547565 - 8547481
Alignment:
Q  338 attctatcctgtctcaatccactgtttggtgcgtccataggaaatgataagtttaacctatttctaatcatatcctatccaccct 422  Q
    |||||||| ||| ||||||| | |||||| || || |||||||| ||||| || ||||||||||||||| |||| ||| ||||||    
T  8547565 attctatcatgtttcaatccgccgtttggagcatcaataggaaaggataacttaaacctatttctaatcttatcatattcaccct 8547481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 2565919 - 2565887
Alignment:
Q  379 aaatgataagtttaacctatttctaatcatatc 411  Q
    |||||||||||||||| ||||||||||||||||    
T  2565919 aaatgataagtttaacatatttctaatcatatc 2565887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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