View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_39 (Length: 424)
Name: NF3582_low_39
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 14075104 - 14074712
Alignment:
| Q |
20 |
tcccataaagtccccaatatgaattattcccatttcaatagattgaccaccattctccaaacccagttgtttcactatgtattcttttgcgcggacaatt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14075104 |
tcccataaagtccccaatatgaattattcccatttcaatagattgaccaccattctctaaacccagttgtttcactatgtattcttttgcgcggacaatt |
14075005 |
T |
|
| Q |
120 |
tccttcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14075004 |
tccttcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatg |
14074905 |
T |
|
| Q |
220 |
cttcctgatttcttcccttactagacttctgatcttcaacacgcttatatatctcgttagctcggtccttaatggtgggaaccattcccaacttctcagc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14074904 |
cttcctgatttcttcccttactagacttctgatcttcaacccgcttatatatctcattagctcggtccttaatggtgggaaccagtcccaacttctcagc |
14074805 |
T |
|
| Q |
320 |
cataatatcaatagtttggaacgaaacgatcaatccaagatcgggattagaactactattctgcaaacgaccaagagacgttgagtgaacatc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
14074804 |
cataatatcaatagtttggaacgaaacgatcaatcctagatcgggattagaactactattctgccaacgaccaagagacgatgagggaacatc |
14074712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 13610044 - 13609695
Alignment:
| Q |
23 |
cataaagtccccaatatgaattattcccatttcaatagattgaccaccattctccaaacccagttgtttcactatgtattcttttgcgcggacaatttcc |
122 |
Q |
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|
||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
13610044 |
cataaagtccccagcatgaattgttcccatttctacagattgaccaccattctccaaaccaagttgtttcactatgtattcttttgcacggccaatttcc |
13609945 |
T |
|
| Q |
123 |
ttcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatgctt |
222 |
Q |
| |
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||||| |||||||||||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
13609944 |
ttctttgtggctccattggcaaccgagcaaatttcctttacagtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgt |
13609845 |
T |
|
| Q |
223 |
cctgatttcttcccttactagacttctgatcttcaacacgcttatatatctcgttagctcggtccttaatggtgggaaccattcccaacttctcagccat |
322 |
Q |
| |
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| |||||||||||| |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| | ||||||| ||||||| |||||||||| |
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| T |
13609844 |
cttgatttcttcccctactagacttctgatcttgaacccgcttatatatctcattagctcggtccttaatgatcggaaccagtcccaacctctcagccat |
13609745 |
T |
|
| Q |
323 |
aatatcaatagtttggaacgaaacgatcaatccaagatcgggattagaac |
372 |
Q |
| |
|
| |||||||||||| ||||| || |||||||||| ||||||||||||||| |
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| T |
13609744 |
agtatcaatagttttgaacgcaaggatcaatccacgatcgggattagaac |
13609695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 14150528 - 14150203
Alignment:
| Q |
7 |
tcgaagaatatcttcccataaagtccccaatatgaattattcccatttcaatagattgaccaccattctccaaacccagttgtttcactatgtattcttt |
106 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||| | |||||||||| ||||||| ||| |
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| T |
14150528 |
tcgaacaaaatcgtcccataaagtccccaatatgagttgttcccatttctacagattgaccaccattctccaaagctagttgtttcatgatgtattgttt |
14150429 |
T |
|
| Q |
107 |
tgcgcggacaatttccttcttggtggctccattggcaatcaaacaaatttcctttatagtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaa |
206 |
Q |
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||||||| ||||||||||||||||||||||| | |||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
14150428 |
tgcgcggccaatttccttcttggtggctccaatagcaatcgaggaaatttcctttacagtgtgtggcttgtcttcttgtcgacaagcaatgtagaggcaa |
14150329 |
T |
|
| Q |
207 |
gcagccaataatgcttcctgatttcttcccttactagacttctgatcttcaacacgcttatatatctcgttagctcggtccttaatggtgggaaccattc |
306 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||| ||||||||| | |||| ||||||||||||| ||||||||||||||||||| ||||||| || |
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| T |
14150328 |
gcagccaataatgcgtcctggtttcttgccttactatacttctgatttgcaaccagcttatatatctcaatagctcggtccttaatggtcggaaccagtc |
14150229 |
T |
|
| Q |
307 |
ccaacttctcagccataatatcaata |
332 |
Q |
| |
|
|||||||||||| |||| |||||||| |
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| T |
14150228 |
ccaacttctcagtcatagtatcaata |
14150203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 36012426 - 36012549
Alignment:
| Q |
22 |
ccataaagtccccaatatgaattattcccatttcaatagattgaccaccattctccaaacccagttgtttcactatgtattcttttgcgcggacaatttc |
121 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
36012426 |
ccataaagtccccagcatgaattgttcccatttcaacagattgaccgccattctccaaacccagttgtttcactatgtattcttttgcgcggccaatttc |
36012525 |
T |
|
| Q |
122 |
cttcttggtggctccattggcaat |
145 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
36012526 |
cttcttggtggctccattggcaat |
36012549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 36012663 - 36012786
Alignment:
| Q |
165 |
gtgcgtggcttgtcttcttgtcgacaagcaatgtagacgcaagcagccaataatgcttcctgatttcttcccttactagacttctgatcttcaacacgct |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
36012663 |
gtgcgtggcttgtcttcttgtcgacaagcaatgtagaggcaagcagccaataatgcgtcctgatttcttcccctgctagacttctgatcttcaacccgct |
36012762 |
T |
|
| Q |
265 |
tatatatctcgttagctcggtcct |
288 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
36012763 |
tatatatctcattagctcggtcct |
36012786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 36014204 - 36014286
Alignment:
| Q |
315 |
tcagccataatatcaatagtttggaacgaaacgatcaatccaagatcgggattagaactactattctgcaaacgaccaagaga |
397 |
Q |
| |
|
||||||||| || ||||||||| ||||| || |||||||||| ||||||||||||||| | ||||||| |||| || ||||| |
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|
| T |
36014204 |
tcagccatagtaccaatagttttgaacgcaaggatcaatccacgatcgggattagaaccgcgattctgccaacggccgagaga |
36014286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 22090700 - 22090775
Alignment:
| Q |
69 |
ccattctccaaacccagttgtttcactatgtattcttttgcgcggacaatttccttcttggtggctccattggcaa |
144 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||||||| |
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|
| T |
22090700 |
ccattatccaaaccaagttgtttcactatgtactcttttgctcggccaatttccttctttgtggcaccattggcaa |
22090775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 289
Target Start/End: Original strand, 22090900 - 22091012
Alignment:
| Q |
177 |
tcttcttgtcgacaagcaatgtagacgcaagcagccaataatgcttcctgatttcttcccttactagacttctgatcttcaacacgcttatatatctcgt |
276 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||| || || || ||||||||||| |||||||||| || |||||||| | |||||||||||| | |
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|
| T |
22090900 |
tcttcttgtcggcaagcgatgtagatacaagcagccaacaaagcatcttgatttcttcctctactagacttttggtcttcaaccctcttatatatctcat |
22090999 |
T |
|
| Q |
277 |
tagctcggtcctt |
289 |
Q |
| |
|
| ||||| ||||| |
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|
| T |
22091000 |
ttgctcgatcctt |
22091012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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