View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_41 (Length: 417)
Name: NF3582_low_41
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 40310723 - 40310334
Alignment:
| Q |
13 |
aaaatagctgaaatctttaaccattaactcaattcccatgcagagagaccagtacatgtatatttgaccggtctaatctcatcaacctctatgttttttc |
112 |
Q |
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| T |
40310723 |
aaaatagctgaaatctttaaccattaactcaattcccatgcagagagaccagtacatgtatatttgaccggtctaatctcatcaacctctatgttttttc |
40310624 |
T |
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| Q |
113 |
tctaacataacttaattgtcaataataataaatgagccctgtggactgtagccataaataaaaaatgttcaattgataagttttgtaataggtgacaaaa |
212 |
Q |
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| T |
40310623 |
tctaacataacttaattgtcaataataataaatgagccctgtggactgtagccataaataaaaaatgttcaattgataagttttgtaataggtgacaaaa |
40310524 |
T |
|
| Q |
213 |
ctatgacagaagagatttaacatcgttgtattctcatgtttgaattcaaactcatgacttct--ttaacataaaagagatctcttactatctcataagag |
310 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40310523 |
ctatgaccgaagagatttaacatcgttgtattctcatgtttgaattcaaactcatgacttcttgttaacataaaagagatctcttactatctcataagag |
40310424 |
T |
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| Q |
311 |
tgcttttagataaaaatgaaagattctattactaaaattttgatttagtgcatattatttctagtgatatatagttctttaggcagcaaa |
400 |
Q |
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| T |
40310423 |
tgcttttggataaaaatgaaagattctattactaaaattttaatttagtgcatattatttctagtaatatataggtctttaggcagcaaa |
40310334 |
T |
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