View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_42 (Length: 416)
Name: NF3582_low_42
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 25528062 - 25528227
Alignment:
| Q |
36 |
ttttcattatgacttgcttgttttgacccatactaattatgacttgtattacatactctcttcagtggcattttagcgtgggaatggaaaagagttttcc |
135 |
Q |
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| T |
25528062 |
ttttcattatgacttgcttgttttgacccatactaattatgacttgtatttcatactcacttcagtggcattttagtgtgggaatggaaaagagttttcc |
25528161 |
T |
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| Q |
136 |
accgaagaattttaacgattatataaatgaggaacattgatcttatcatagtctctctgcattata |
201 |
Q |
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| T |
25528162 |
acacgagaattttaactattatataaatgagaaatattgattttatcatagtttctttgcattata |
25528227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 232047 - 231998
Alignment:
| Q |
143 |
aattttaacgattatataaatgaggaacattgatcttatcatagtctctc |
192 |
Q |
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| T |
232047 |
aattttaaccattagataaatgaggaacattgatcttatcatagtctctc |
231998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 231655 - 231706
Alignment:
| Q |
313 |
catgcaactcttccattaacatatattgggcttcttcttcactgaagcctct |
364 |
Q |
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| T |
231655 |
catgcaactcttccattaacacattttgggcttctctttcgctgaagcctct |
231706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 46707465 - 46707502
Alignment:
| Q |
164 |
gaggaacattgatcttatcatagtctctctgcattata |
201 |
Q |
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| T |
46707465 |
gaggaacattgattttatcatagtctttctgcattata |
46707502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 16689643 - 16689688
Alignment:
| Q |
143 |
aattttaacgattatataaatgaggaacattgatcttatcatagtc |
188 |
Q |
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| T |
16689643 |
aattttaactattagataaatgagaaacattaatcttatcatagtc |
16689688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 25329935 - 25329898
Alignment:
| Q |
164 |
gaggaacattgatcttatcatagtctctctgcattata |
201 |
Q |
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| T |
25329935 |
gaggaacattgattttatcatagtctctctacattata |
25329898 |
T |
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