View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_low_44 (Length: 409)
Name: NF3582_low_44
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_44 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 38096880 - 38096486
Alignment:
| Q |
1 |
gcctccctcttttcctcttttgtttcctttaacttcacctcatccatccctagcctgcttctcctgtaagaaaacaaaaggtaacaaattaaacaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38096880 |
gcctccctcttttcctcttttgtttcctttaacttcacctcatccatccctagcctgcttctcctgtaagaaaacaaaaggtaacat-ttaaacaacaaa |
38096782 |
T |
|
| Q |
101 |
taaaagaaattctataagtaattaatgagaaacgtacctttcttcattataggaattagatttcttgagcacaggttcagcttgaaaagcaacccggttt |
200 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38096781 |
taaaagaaattctaaaagtaat----gagaaacgtacctttcttcattataggaattagatttcttgagcacaggttcagcttgaaaagcaacccggttt |
38096686 |
T |
|
| Q |
201 |
gctttcatggattccacaatactcccactaaagtattccttctcttcactctgcaaattccccatcaaccttggattctccgttacacatatatcttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38096685 |
gctttcatggattccacaatactcccactaaagtattccttctcttcactctgcaaattccccatcaaccttggattctccgttacacatatatcttcat |
38096586 |
T |
|
| Q |
301 |
caccagaatacactttctcttcatcaacactctcccttcttttgcttgtggtccccacattgctcagcctcccttcctgctgctttgctttcatctctgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38096585 |
caccagaatacactttctcttcatcaacactctcccttctcttgcttgttgtccccacattgctcagcctcccttcctgctgctttgctttcatctctgc |
38096486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University