View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_45 (Length: 399)
Name: NF3582_low_45
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 1371045 - 1370682
Alignment:
| Q |
18 |
ttctttcttgggagtagcttttcaaaaactgggaaaagttgatgtttttcaaccttttatggaataaagacataaaaagttgttaattttattcattgga |
117 |
Q |
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| T |
1371045 |
ttctttcttggtagtagcttctcaaaaactgggaaaaggtgatgtttttcaaccttttatggaataaagacataaaaagttgttaattttattcattgga |
1370946 |
T |
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| Q |
118 |
gttggtggannnnnnnnnnnnnnnnnngaaattttcatatagtattggttagattttgaatgtgaaatgtcatttaaaagaagta----tcatggcatgc |
213 |
Q |
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| T |
1370945 |
gttggtggattttttttttgttttt--gaaattttcagata---ttggttagattttgaatgtgaaatgtcatttaaaagaagtaaccatcatggcatgc |
1370851 |
T |
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| Q |
214 |
cacgttcaaaggttggatctctagtttcaaaaatggagttgagaggatattagttgttgttgaattttgtaggtttgagtattaatagtaggtggtttag |
313 |
Q |
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| T |
1370850 |
cacgttcaagggttggatctctagtttcaaaaatggagttgagaggatattagttgttgttgaattttgtaggtttgagtattaatagtaggtggtttag |
1370751 |
T |
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| Q |
314 |
caatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatggttgaattttg |
382 |
Q |
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| T |
1370750 |
caatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatggttgaattttg |
1370682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 2502812 - 2502874
Alignment:
| Q |
309 |
tttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatg |
371 |
Q |
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| T |
2502812 |
tttagcaatgagatggaaggtgtttgttagggattaaaggaagtagatggtggtagttacatg |
2502874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 7323759 - 7323697
Alignment:
| Q |
309 |
tttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttacatg |
371 |
Q |
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| T |
7323759 |
tttagcaatgagatagaaggtgtttgttagggattaaaggaagtagatggtggtagttacatg |
7323697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 757107 - 757033
Alignment:
| Q |
295 |
ttaatagtaggtggtttagcaatgaggttaaatgtattagttagtgattaaaggaagtagatggtggtagttaca |
369 |
Q |
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| T |
757107 |
ttaataatagatgttttcgcaatgaggtggatggtatttgttagtgattagaggaagtagatggtgctagttaca |
757033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 9561278 - 9561246
Alignment:
| Q |
327 |
tgtattagttagtgattaaaggaagtagatggt |
359 |
Q |
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| T |
9561278 |
tgtatttgttagtgattaaaggaagtagatggt |
9561246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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