View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_47 (Length: 372)
Name: NF3582_low_47
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 47196421 - 47196088
Alignment:
| Q |
1 |
ctctaatgaagctttttcttacaacgtagatatgtcacgttaatttagctgtataacatttatagaaggattgcactaatgacggaagagataagagaag |
100 |
Q |
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| T |
47196421 |
ctctaataaagctttttcttacaacgtagatatgtcacgttaatttagctgtataacatttatagaaggattgcactaatgacggaagagataagagaag |
47196322 |
T |
|
| Q |
101 |
gataagagaaacaaaacacatatccatccacatattaattagatacttgagtggatggataaaaagaatcacttgttatatctaattttaactaggagat |
200 |
Q |
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| T |
47196321 |
gataagagaaacaaaacacatatccatccacatattaattagatacttgagtggatggataaaaagaatcacttgttatatctaattttaactaggagat |
47196222 |
T |
|
| Q |
201 |
gtctttcactaagtt--atatctagttattgag-aataatataaggggaatgagagtaattatttagttcacttggattataacctcttaaaactccttt |
297 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
47196221 |
gtctttcactaagttatatatctagttattgagaaataatataaggggaatgagagtaattgattagttcagttggattataacctcttaaaactacttt |
47196122 |
T |
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| Q |
298 |
atttttgtgctctctatttttggttctcttactc |
331 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
47196121 |
atttttgtgctctctatttttagttctcttactc |
47196088 |
T |
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