View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_50 (Length: 360)
Name: NF3582_low_50
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 49289782 - 49289450
Alignment:
| Q |
19 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49289782 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49289683 |
T |
|
| Q |
119 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289682 |
catgcttatataggggtttttgaagggaagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
49289583 |
T |
|
| Q |
219 |
ttcaaaatcattgaaagtgattcatcaattaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgca |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49289582 |
ttcaaaatcattgaaagtgattgatcaattaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgca |
49289483 |
T |
|
| Q |
319 |
tgcatacggaacaaatcaagac-aagtcctttg |
350 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
49289482 |
tgcatacggaacaaatcaagacaaagtcctttg |
49289450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 49296733 - 49296401
Alignment:
| Q |
19 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49296733 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49296634 |
T |
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| Q |
119 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49296633 |
catgcttatataggggtttttgaagggaagaaattaaggcttgttgttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcact |
49296534 |
T |
|
| Q |
219 |
ttcaaaatcattgaaagtgattcatcaattaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgca |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49296533 |
ttcaaaatcattgaaagtgattgatcaattaagtccacttttactactagctagtacaaacgattatattcttcatccatgcattgattgattgcatgca |
49296434 |
T |
|
| Q |
319 |
tgcatacggaacaaatcaagac-aagtcctttg |
350 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |
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| T |
49296433 |
tgcatacggaacaaatcaagacaaagtcctttg |
49296401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 49303463 - 49303232
Alignment:
| Q |
19 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49303463 |
atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgttagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtgg |
49303364 |
T |
|
| Q |
119 |
catgcttatataggggtttttgaacggaagaaattaaggcttgttgttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcact |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
49303363 |
catgcttatataggggtttttgaagggaagaaattaaggctt---gttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcatt |
49303267 |
T |
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| Q |
219 |
ttcaaaatcattgaaagtgattcatcaattaagtc |
253 |
Q |
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||||||||| |||||||||||| |||||||||||| |
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| T |
49303266 |
ttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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