View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_54 (Length: 339)
Name: NF3582_low_54
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 54573653 - 54573973
Alignment:
| Q |
1 |
agaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtattttgnnnnnn |
100 |
Q |
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| T |
54573653 |
agaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtattttgtttttt |
54573752 |
T |
|
| Q |
101 |
ngtgcttatgcttctaatgtgaatcaaattttgtttatcaggttgatttgaaagacaagtggagaaatatgaagcggtctggatgccaatgaaaatttta |
200 |
Q |
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| T |
54573753 |
tgtgcttatgcttctaatgtgaatcaaattttgtttatcaggttgatttgaaagacaagtggagaaatatgaagcggtctggatgccaatgaaaatttta |
54573852 |
T |
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| Q |
201 |
tgcatgtannnnnnnnnnnnnnnnnnnngctgatcagttcatgccaaacagaagggctgtatatattaacagagttcaaatgatgatctcaaattgagat |
300 |
Q |
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| T |
54573853 |
tgcatgtattttattttttattttttttgctgatcagttcatgccaaacagaagggctgtatatattaatagagttcaaatgatgatctcaaattgagat |
54573952 |
T |
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| Q |
301 |
agtattactttttgaatttgg |
321 |
Q |
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||||||||||||||||||||| |
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| T |
54573953 |
agtattactttttgaatttgg |
54573973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 55156938 - 55157259
Alignment:
| Q |
1 |
agaattggagaaggaaactggaaatcaattcttcgttcttatgattttgacgaaagaactgaagtaagtctagttaaaaggtattggtat----tttgnn |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
55156938 |
agaattggagaaggaaactggaaatcaattcttcgttcttatgcatttgacgaaagaactgaagtaagtctagttaaaaggtattggttttttcttttct |
55157037 |
T |
|
| Q |
97 |
nnnnngtgcttatgcttctaatgtgaatcaaattttgtttatcaggttgatttgaaagacaagtggagaaatatgaagcggtctggatgccaatgaaaat |
196 |
Q |
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| T |
55157038 |
tttttctgcttatgcttttaacgtgaattaaattttgtttatcaggttgatttaaaagataagtggagaaatttgaagcggtatgaaagccaatgaaaaa |
55157137 |
T |
|
| Q |
197 |
tttatgcatgtannnnnnnnnnnnnnnnnnnngctgatcagttcatgccaaac-agaagggctgtatatattaacagagttcaaatgatgatctcaaatt |
295 |
Q |
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|||||||||||| |||||| |||||||||||||| | |||| |||||| |||||||| ||| |||||| ||| |||||||| |
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| T |
55157138 |
tttatgcatgta----tttttttttgttttttgctgattagttcatgccaaacaaaaaggcctgtatttattaacatagtccaaatggtgaactcaaatt |
55157233 |
T |
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| Q |
296 |
gagatagtattactttttgaatttgg |
321 |
Q |
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|||||||||||||||||||||||||| |
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| T |
55157234 |
gagatagtattactttttgaatttgg |
55157259 |
T |
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