View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_55 (Length: 335)
Name: NF3582_low_55
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 335
Target Start/End: Original strand, 10970298 - 10970629
Alignment:
| Q |
6 |
cacagacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggttta |
105 |
Q |
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| T |
10970298 |
cacagacaaaagatgaacaacttactcgattaaaatacaggaacaacatcttttcctcatctccagcgcttcttctgaaaatttattagaaaatggttta |
10970397 |
T |
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| Q |
106 |
taaacaagtgaagcagcatatgtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctac |
205 |
Q |
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| T |
10970398 |
taaacaagtgaagcagcataggtatttgttcatataaatttccatttcagtactaaagatgtttcaagtattcaattacattagcgattctagattctac |
10970497 |
T |
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| Q |
206 |
acagtcaggaaaagcatgcagt--tgagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaat |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970498 |
acagtcaggaaaagcatgcagtcaagagatcccaactgttaattgaagatcagatgacttgtattacgagatgtatattttaaagtggatttggtaaaat |
10970597 |
T |
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| Q |
304 |
cataatacaagtctaatcttcatcttatagtc |
335 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10970598 |
cataatacaagtctaatcttcatcttatagtc |
10970629 |
T |
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