View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_57 (Length: 333)
Name: NF3582_low_57
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 26732719 - 26733036
Alignment:
| Q |
1 |
gaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttgtacatttatctttttctttacaaaatcaaaaaccatcatatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26732719 |
gaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttttgcatttatctttttctttacaaaatcaaaaaccatcatatttc |
26732818 |
T |
|
| Q |
101 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaaccaacacgtaaatgtaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26732819 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaaccaacacctaaatgtaacaa |
26732918 |
T |
|
| Q |
201 |
ctcttaaagctgtttttgttggtgttccaatgtttacattccctttattctttgagcaagttaaaaagatctgaatcgtgaggatttgatcacaccagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
26732919 |
ctcttaaagctgtttttgttggtgttccaatgtttacattccgtttattctttgagcaagttaaaaagatcagaaacgtgaggatttgatcacaccagaa |
26733018 |
T |
|
| Q |
301 |
caaatatagaaagttatg |
318 |
Q |
| |
|
|||||||||||||||||| |
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| T |
26733019 |
caaatatagaaagttatg |
26733036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 84 - 319
Target Start/End: Original strand, 26691404 - 26691639
Alignment:
| Q |
84 |
aaaaaccatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacca |
183 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26691404 |
aaaaaccatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacca |
26691503 |
T |
|
| Q |
184 |
acacgtaaatgtaacaactcttaaagctgtttttgttggtgttccaatgtttacattccctttattctttgagcaagttaaaaagatctgaatcgtgagg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26691504 |
acacgtaaatgtaacaactcttaaagctgtttttgttggtgttccaatgtttacattccctttattctttgagcaagttaaaaagatcagaatcgtgagg |
26691603 |
T |
|
| Q |
284 |
atttgatcacaccagaacaaatatagaaagttatga |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26691604 |
atttgatcacaccagaacaaatatagaaagttatga |
26691639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 26696782 - 26697095
Alignment:
| Q |
1 |
gaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttgtacatttatctttttctttacaaaatcaaaaaccatcatatttc |
100 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||| ||||||||| || |||| |
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| T |
26696782 |
gaaaattactcagaaactcacccctggattaataaaattttcatctcccacatttgtgcatttatctttttctttacataataaaaaaccatgatgtttc |
26696881 |
T |
|
| Q |
101 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaaccaacacgtaaatgtaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||| ||| ||||| ||||||||||||| ||||||||| || |
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| T |
26696882 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcaaatgttttcaggattgtcaaatgaccccacaaaccaacacctaaatgtaataa |
26696981 |
T |
|
| Q |
201 |
ctcttaaagctgtttttgttggtgttccaatgtttacattccctttattctttgagcaagttaaaaagatctgaatcgtgaggatttgatcacaccagaa |
300 |
Q |
| |
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||||| |||||| | ||| ||||||||||||| ||||| |||||||| | ||||| |||||||||||||| | | ||||||||| |||||||||| |||| |
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| T |
26696982 |
ctcttgaagctg-tattgctggtgttccaatg-ttacaatccctttactatttgaccaagttaaaaagatataagtcgtgaggaattgatcacacaagaa |
26697079 |
T |
|
| Q |
301 |
caaatatagaaagtta |
316 |
Q |
| |
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|||||||||||||||| |
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|
| T |
26697080 |
caaatatagaaagtta |
26697095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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