View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_58 (Length: 321)

Name: NF3582_low_58
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_58
NF3582_low_58
[»] chr5 (6 HSPs)
chr5 (18-304)||(29280962-29281238)
chr5 (220-290)||(17258869-17258939)
chr5 (241-298)||(13604827-13604884)
chr5 (170-228)||(31030198-31030260)
chr5 (260-297)||(32890607-32890644)
chr5 (179-228)||(41016132-41016181)
[»] chr8 (13 HSPs)
chr8 (220-295)||(43368681-43368756)
chr8 (196-279)||(20672742-20672823)
chr8 (241-279)||(3600735-3600773)
chr8 (241-279)||(14339602-14339640)
chr8 (220-298)||(14949880-14949958)
chr8 (241-278)||(4281581-4281618)
chr8 (241-290)||(30389134-30389183)
chr8 (244-288)||(779049-779093)
chr8 (219-279)||(3254238-3254298)
chr8 (196-228)||(7878554-7878586)
chr8 (242-290)||(10358614-10358662)
chr8 (253-297)||(10690035-10690079)
chr8 (196-224)||(29056063-29056091)
[»] chr1 (21 HSPs)
chr1 (241-298)||(10199386-10199443)
chr1 (196-288)||(601031-601122)
chr1 (220-296)||(25479595-25479671)
chr1 (219-290)||(3924637-3924708)
chr1 (263-297)||(11584546-11584580)
chr1 (245-279)||(47917275-47917309)
chr1 (241-290)||(4576840-4576889)
chr1 (245-290)||(38266446-38266491)
chr1 (183-223)||(44115978-44116019)
chr1 (196-228)||(4200199-4200231)
chr1 (243-279)||(5276330-5276366)
chr1 (243-279)||(5886991-5887027)
chr1 (245-297)||(6262059-6262111)
chr1 (154-198)||(7120072-7120116)
chr1 (170-198)||(7137105-7137133)
chr1 (196-228)||(7218142-7218174)
chr1 (196-228)||(25006102-25006134)
chr1 (196-228)||(27738248-27738280)
chr1 (242-290)||(29635383-29635431)
chr1 (196-228)||(37272654-37272686)
chr1 (196-228)||(44032067-44032099)
[»] chr4 (10 HSPs)
chr4 (220-298)||(2996587-2996665)
chr4 (240-290)||(17223022-17223072)
chr4 (245-282)||(8469371-8469408)
chr4 (241-278)||(28300297-28300334)
chr4 (196-228)||(13949912-13949944)
chr4 (196-228)||(18630650-18630682)
chr4 (196-228)||(21952931-21952963)
chr4 (241-277)||(24747354-24747390)
chr4 (196-228)||(25434528-25434560)
chr4 (241-297)||(28614787-28614843)
[»] chr7 (10 HSPs)
chr7 (241-298)||(27708775-27708832)
chr7 (241-297)||(7244715-7244771)
chr7 (243-290)||(34035954-34036002)
chr7 (196-279)||(39539778-39539861)
chr7 (241-300)||(46082071-46082130)
chr7 (245-282)||(9423588-9423625)
chr7 (241-290)||(15740397-15740446)
chr7 (242-286)||(21247962-21248006)
chr7 (196-228)||(23918927-23918959)
chr7 (241-269)||(43648275-43648303)
[»] chr3 (14 HSPs)
chr3 (210-279)||(36200100-36200169)
chr3 (169-228)||(20669561-20669621)
chr3 (241-279)||(3044256-3044294)
chr3 (241-279)||(5391914-5391952)
chr3 (241-279)||(25925777-25925815)
chr3 (241-279)||(39602207-39602245)
chr3 (241-279)||(52440659-52440697)
chr3 (241-278)||(33883748-33883785)
chr3 (245-298)||(37273173-37273226)
chr3 (245-290)||(43116427-43116472)
chr3 (241-290)||(47513688-47513737)
chr3 (242-287)||(52619039-52619084)
chr3 (226-278)||(5166343-5166395)
chr3 (196-228)||(33405235-33405267)
[»] chr6 (18 HSPs)
chr6 (241-297)||(9027613-9027669)
chr6 (226-278)||(30604916-30604968)
chr6 (202-298)||(32577964-32578060)
chr6 (241-279)||(6647422-6647460)
chr6 (245-299)||(22743520-22743574)
chr6 (241-279)||(31624125-31624163)
chr6 (241-290)||(34882406-34882456)
chr6 (241-290)||(1575930-1575979)
chr6 (245-290)||(4080955-4081000)
chr6 (241-290)||(20368166-20368215)
chr6 (154-228)||(22742288-22742368)
chr6 (241-282)||(29296289-29296330)
chr6 (154-195)||(31337945-31337986)
chr6 (245-290)||(33887869-33887914)
chr6 (196-228)||(281916-281948)
chr6 (245-297)||(7931705-7931757)
chr6 (196-228)||(21959698-21959730)
chr6 (196-228)||(29274297-29274329)
[»] chr2 (4 HSPs)
chr2 (245-295)||(10285899-10285949)
chr2 (245-279)||(29316772-29316806)
chr2 (196-228)||(11513868-11513900)
chr2 (196-228)||(33944575-33944607)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 29280962 - 29281238
Alignment:
Q  18 agataccggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactgtaattttacatgtgtcaatatcggacactgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  29280962 agataccggacaagaccctaatatgcatgtctcttgataataatttgagaaaatgaattaatcaactttaattttacatatgtcaatgtcggacactgca 29281061  T
Q  118 catactattaatcagatatatcggtgctacagaggtgcttattgtatacgtacttatatataaactatttttataacaaaaataaagtcaatttgttttc 217  Q
    ||||||||||||||||  ||| ||||||           ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29281062 catactattaatcagaagtattggtgct-----------tatcgtataagtacttatatataaactatttttataacaaaaataaagtcaacttgttttc 29281150  T
Q  218 atataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttc-atgagctctcataagt 304  Q
    |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29281151 atataaactatcctcaagatcgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcaatgagctctcagaagt 29281238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 17258939 - 17258869
Alignment:
Q  220 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||| ||||||| |||||   ||||||||||| |||||| | ||||||||||||||||||  |||||||||    
T  17258939 ataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcat 17258869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 13604884 - 13604827
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    |||||||||||||||||| ||| |||| |||||||||||  | ||||||| |||||||    
T  13604884 atgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 31030260 - 31030198
Alignment:
Q  170 cttatatataaactatttttataacaaa----aataaagtcaatttgttttcatataagctat 228  Q
    ||||| ||||| ||||||||||||||||    ||||||||||| ||||| |||||||||||||    
T  31030260 cttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagctat 31030198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 32890644 - 32890607
Alignment:
Q  260 aacttatgaacatgtcataaattattttcatgagctct 297  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  32890644 aacttataaacatgtcataaattattttcattagctct 32890607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 41016132 - 41016181
Alignment:
Q  179 aaactatttttataacaaaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||| |||| |||||||||| ||||  ||||||||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctat 41016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 43368756 - 43368681
Alignment:
Q  220 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 295  Q
    ||||||| |||| |||||| ||||||||||||||||||| | || ||||||||||||||| || ||||||| ||||    
T  43368756 ataagctgtcctaaagagttcatgaaaataagttgaaaatagctaatgaacatgtcataagttgttttcataagct 43368681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 20672742 - 20672823
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||  ||||||  |||||||||||||  ||||   ||||||||||| |||||| | ||||||||||||||||||    
T  20672742 aaaataaagtcaaactgtttt--tataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 3600773 - 3600735
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  3600773 atgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 14339640 - 14339602
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  14339640 atgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 14949880 - 14949958
Alignment:
Q  220 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    |||||||||||| |||||   ||  ||||||| |||||| | |||||| ||||||||||| |||||||||| |||||||    
T  14949880 ataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctc 14949958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 4281581 - 4281618
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcata 278  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  4281581 atgaaaataagatgaaaacaacttatgaacatgtcata 4281618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 30389134 - 30389183
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||| |||||| |||||||||||||||||| |  |||||||||    
T  30389134 atgaaaataagctgaaaacaacttatgaacatgtcattagctattttcat 30389183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 779093 - 779049
Alignment:
Q  244 aaaataagttgaaaagaacttatgaacatgtcataaattattttc 288  Q
    |||||||| |||||| |||||||||||||||||||| || |||||    
T  779093 aaaataagatgaaaacaacttatgaacatgtcataagttgttttc 779049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 3254238 - 3254298
Alignment:
Q  219 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||  |||||| ||  ||||||| |||||| | ||||||||||||||||||    
T  3254238 tataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtcataa 3254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 7878586 - 7878554
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  7878586 aaaataaagtcaaattgttttcatataagctat 7878554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 10358614 - 10358662
Alignment:
Q  242 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||| | |||||  ||||||||||||||||||| ||||||||||    
T  10358614 tgaaaataaatcgaaaacgacttatgaacatgtcataagttattttcat 10358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 10690035 - 10690079
Alignment:
Q  253 tgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    |||||| ||||||||||||| |||||| |||||| ||||||||||    
T  10690035 tgaaaataacttatgaacatatcataagttatttacatgagctct 10690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 29056091 - 29056063
Alignment:
Q  196 aaaataaagtcaatttgttttcatataag 224  Q
    |||||||||||||||||||||||||||||    
T  29056091 aaaataaagtcaatttgttttcatataag 29056063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 10199443 - 10199386
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    ||||||||||| |||||| ||||||||||||||||||||  |||||||||||| ||||    
T  10199443 atgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctc 10199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 601031 - 601122
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttc 288  Q
    ||||||||||||| ||||||||||||| ||||||||  |||||  ||||||||||| |||||| | ||||  |||||||||||| || |||||    
T  601031 aaaataaagtcaagttgttttcatatatgctatcctggagagtttatgaaaataagctgaaaatagctta-caacatgtcataagttgttttc 601122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 25479595 - 25479671
Alignment:
Q  220 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctc 296  Q
    ||||||||||||  ||||   ||||||||||| |||||| |||| |||||||||||||||  ||||||||| |||||    
T  25479595 ataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 3924637 - 3924708
Alignment:
Q  219 tataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||||| ||||||  ||| |||||||  ||||| ||||||| ||||| ||||||||| |||||||    
T  3924637 tataagctatcctgaagagtttatggaaataagccgaaaacaacttataaacatttcataaattgttttcat 3924708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 11584546 - 11584580
Alignment:
Q  263 ttatgaacatgtcataaattattttcatgagctct 297  Q
    |||||||||||||||||||||||||||| ||||||    
T  11584546 ttatgaacatgtcataaattattttcataagctct 11584580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 47917275 - 47917309
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||| ||||||||||||||||||||    
T  47917275 aaataagttgaaaacaacttatgaacatgtcataa 47917309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 4576840 - 4576889
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||| |||| | ||||||| ||||||||||||| |||||||||    
T  4576840 atgaaaataagctgaacacaacttataaacatgtcataaactattttcat 4576889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 38266491 - 38266446
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||||||| || ||||||||||||| ||| ||||||||||    
T  38266491 aaataagttgaaaacaaattatgaacatgtcgtaagttattttcat 38266446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 44116019 - 44115978
Alignment:
Q  183 tatttttataacaaaa-ataaagtcaatttgttttcatataa 223  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  44116019 tatttttataacaaaagataaagtcaaattgttttcatataa 44115978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 4200199 - 4200231
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  4200199 aaaataaagtcaagttgttttcatataagctat 4200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 5276330 - 5276366
Alignment:
Q  243 gaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  5276330 gaaaataacttgaaaacaacttatgaacatgtcataa 5276366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 5887027 - 5886991
Alignment:
Q  243 gaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  5887027 gaaaataagctgaaaacaacttatgaacatgtcataa 5886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 6262059 - 6262111
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    |||||||||||||| | |||||||||||||||||| || || |||| ||||||    
T  6262059 aaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctct 6262111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 7120072 - 7120116
Alignment:
Q  154 gcttattgtatacgtacttatatataaactatttttataacaaaa 198  Q
    |||||| ||||| || |||||||||||||||||| ||||||||||    
T  7120072 gcttatggtataagtgcttatatataaactatttatataacaaaa 7120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Complemental strand, 7137133 - 7137105
Alignment:
Q  170 cttatatataaactatttttataacaaaa 198  Q
    |||||||||||||||||||||||||||||    
T  7137133 cttatatataaactatttttataacaaaa 7137105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 7218174 - 7218142
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  7218174 aaaataaagtcaaattgttttcatataagctat 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 25006134 - 25006102
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  25006134 aaaataaagtcaaattgttttcatataagctat 25006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 27738280 - 27738248
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  27738280 aaaataaagtcaaattgttttcatataagctat 27738248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 29635383 - 29635431
Alignment:
Q  242 tgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||| |||||| ||||||| |||||||||||| || |||||||    
T  29635383 tgaaaataagctgaaaacaacttataaacatgtcataacttgttttcat 29635431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 37272686 - 37272654
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    |||||||||||||| ||||||||||||||||||    
T  37272686 aaaataaagtcaatctgttttcatataagctat 37272654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 44032099 - 44032067
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  44032099 aaaataaagtcaaattgttttcatataagctat 44032067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 2996587 - 2996665
Alignment:
Q  220 ataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    |||||||||| |  |||| | |||||||||||||||||| | |||||| ||||||||||| || ||||||| |||||||    
T  2996587 ataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctc 2996665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 17223072 - 17223022
Alignment:
Q  240 catgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||| |||||||||||||| | ||||||||||||||||||| |||||||||    
T  17223072 catggaaataagttgaaaacagcttatgaacatgtcataaactattttcat 17223022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 8469408 - 8469371
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaatt 282  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  8469408 aaataagctgaaaacaacttatgaacatgtcataaatt 8469371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 28300334 - 28300297
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcata 278  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  28300334 atgaaaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 13949944 - 13949912
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  13949944 aaaataaagtcaaattgttttcatataagctat 13949912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 18630650 - 18630682
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||||| |||||||||||||||||    
T  18630650 aaaataaagtcaattggttttcatataagctat 18630682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 21952931 - 21952963
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  21952931 aaaataaagtcaaattgttttcatataagctat 21952963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 24747354 - 24747390
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcat 277  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  24747354 atgaaaataagctgaaaacaacttatgaacatgtcat 24747390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 25434560 - 25434528
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    |||||||||||||| ||||||||||||||||||    
T  25434560 aaaataaagtcaatatgttttcatataagctat 25434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 28614843 - 28614787
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    ||||||||||| |||||||| |||||| | |||||||||||| ||| ||| ||||||    
T  28614843 atgaaaataagctgaaaagagcttatggatatgtcataaattgtttccataagctct 28614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 27708832 - 27708775
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    |||||||||||||||||| | |||||||||| ||  |||||||||||||| |||||||    
T  27708832 atgaaaataagttgaaaatagcttatgaacacgttgtaaattattttcataagctctc 27708775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 7244715 - 7244771
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    ||||||||||| |||||| ||||||||| ||||||||||||| ||| ||| ||||||    
T  7244715 atgaaaataagctgaaaacaacttatgagcatgtcataaattgtttccatcagctct 7244771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 34035954 - 34036002
Alignment:
Q  243 gaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 290  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  34035954 gaaaataagttgaaaacaacttatgaacaatgtcataagttattttcat 34036002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 39539861 - 39539778
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||| |||| |||||||||||||||||||||||  |||    | |||||||| |||||| | |||||| |||||||||||    
T  39539861 aaaataaattcaaattgttttcatataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataa 39539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 46082071 - 46082130
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctcat 300  Q
    ||||||||||| |||||| ||||||||  |||||||||| || ||||||| |||||||||    
T  46082071 atgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcat 46082130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 9423625 - 9423588
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaatt 282  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  9423625 aaataagctgaaaacaacttatgaacatgtcataaatt 9423588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 15740446 - 15740397
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  15740446 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 15740397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 21247962 - 21248006
Alignment:
Q  242 tgaaaataagttgaaaagaacttatgaacatgtcataaattattt 286  Q
    |||||||||| | |||| |||||||||||||||||||| ||||||    
T  21247962 tgaaaataagcttaaaacaacttatgaacatgtcataagttattt 21248006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 23918927 - 23918959
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  23918927 aaaataaagtcaaattgttttcatataagctat 23918959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 43648275 - 43648303
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaa 269  Q
    |||||||||||||||||||||||||||||    
T  43648275 atgaaaataagttgaaaagaacttatgaa 43648303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 36200100 - 36200169
Alignment:
Q  210 ttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||| |||||||||||||  ||||  |||| ||||||| |||||| |||||||| |||||||||||    
T  36200100 ttgttttcttataagctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataa 36200169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 20669561 - 20669621
Alignment:
Q  169 acttatatataaactatttttataacaaaaata-aagtcaatttgttttcatataagctat 228  Q
    |||||| ||||| |||||| ||||||||||||| |||| || |||||||||||||||||||    
T  20669561 acttatgtataagctatttctataacaaaaatacaagttaaattgttttcatataagctat 20669621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 3044294 - 3044256
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  3044294 atgaaaataagttgaaaacagcttatgaacatgtcataa 3044256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 5391914 - 5391952
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  5391914 atgaaaataagttgaaaacagcttatgaacatgtcataa 5391952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 25925777 - 25925815
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  25925777 atgaaaataagttgaaaacagcttatgaacatgtcataa 25925815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 39602245 - 39602207
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| || |||||||||||||||||    
T  39602245 atgaaaataagttgaaaacaatttatgaacatgtcataa 39602207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 52440697 - 52440659
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  52440697 atgaaaattagttgaaaacaacttatgaacatgtcataa 52440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 33883785 - 33883748
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcata 278  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  33883785 atgaaaataagctgaaaacaacttatgaacatgtcata 33883748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 37273173 - 37273226
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    |||||||||||||| |||||||| ||||||||||| || ||| ||| |||||||    
T  37273173 aaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctc 37273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 43116472 - 43116427
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||    
T  43116472 aaataagttgaaaagaacttaagaacatgttataagttgttttcat 43116427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 47513688 - 47513737
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||| ||||||| ||||||||||| |||||||| || |||||||    
T  47513688 atgaaaataaattgaaaacaacttatgaacgtgtcataacttgttttcat 47513737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 52619039 - 52619084
Alignment:
Q  242 tgaaaataagttgaaaagaacttatgaacatgtcataaattatttt 287  Q
    |||||||||| |||||| | ||||||||||||||||||||| ||||    
T  52619039 tgaaaataaggtgaaaatagcttatgaacatgtcataaattgtttt 52619084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 5166343 - 5166395
Alignment:
Q  226 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 278  Q
    |||| ||||||| | ||||||||||| |||||| | |||||||||||||||||    
T  5166343 tatcttcaagagcgtatgaaaataagatgaaaacagcttatgaacatgtcata 5166395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 33405267 - 33405235
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    |||||||||| ||||||||||||||||||||||    
T  33405267 aaaataaagttaatttgttttcatataagctat 33405235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 9027613 - 9027669
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||| ||| ||||||    
T  9027613 atgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 30604916 - 30604968
Alignment:
Q  226 tatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcata 278  Q
    |||||| ||||| | ||| |||||||||||||||||||||||||||| |||||    
T  30604916 tatcctgaagagagtatggaaataagttgaaaagaacttatgaacatttcata 30604968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 298
Target Start/End: Complemental strand, 32578060 - 32577964
Alignment:
Q  202 aagtcaatttgttttcatataagctatcctcaagagtgcatgaaaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctc 298  Q
    ||||||| ||||| |||||||||||||||| |||||   ||| ||||||| |||||| | || | | ||||||||||| || ||||||| |||||||    
T  32578060 aagtcaaattgttctcatataagctatcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctc 32577964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 6647422 - 6647460
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  6647422 atgaaaataagttgaaaacatcttatgaacatgtcataa 6647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 22743520 - 22743574
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctctca 299  Q
    ||||||| |||||| | ||||||||||||| |||| || ||||||||||||||||    
T  22743520 aaataagctgaaaacagcttatgaacatgtaataagttgttttcatgagctctca 22743574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 31624125 - 31624163
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataa 279  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  31624125 atgaaaataagttgaaaacagcttatgaacatgtcataa 31624163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 34882456 - 34882406
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaac-atgtcataaattattttcat 290  Q
    |||||||||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  34882456 atgaaaataagtggaaaacaacttatgaacaatgtcataacttattttcat 34882406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 1575930 - 1575979
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    ||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  1575930 atgaaaataagttaaaaacagcttatgaacatgtcataagttgttttcat 1575979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 4080955 - 4081000
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||||||| |||||||||||||| ||||| || |||||||    
T  4080955 aaataagttgaaaacaacttatgaacatggcataagttgttttcat 4081000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 20368215 - 20368166
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||||||||||  | |||||||||||||||||| || |||||||    
T  20368215 atgaaaataagttgaaactagcttatgaacatgtcataagttgttttcat 20368166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 22742288 - 22742368
Alignment:
Q  154 gcttattgtatacgtacttatatataaactatttttataacaaa------aataaagtcaatttgttttcatataagctat 228  Q
    |||||| ||||| || ||||| ||||| |||||| |||||||||      ||||||||||| |||||||||||||||||||    
T  22742288 gcttatcgtataagttcttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctat 22742368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 29296330 - 29296289
Alignment:
Q  241 atgaaaataagttgaaaagaacttatgaacatgtcataaatt 282  Q
    ||||||||||| |||||| |||||||| ||||||||||||||    
T  29296330 atgaaaataagctgaaaataacttatggacatgtcataaatt 29296289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 31337945 - 31337986
Alignment:
Q  154 gcttattgtatacgtacttatatataaactatttttataaca 195  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  31337945 gcttattgtataagtacttatgtataaactatttctataaca 31337986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 33887869 - 33887914
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcat 290  Q
    |||||||||||||| ||||| ||||||||||||||  |||||||||    
T  33887869 aaataagttgaaaacaacttgtgaacatgtcataagctattttcat 33887914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 281948 - 281916
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  281948 aaaataaagtcaacttgttttcatataagctat 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 7931757 - 7931705
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagctct 297  Q
    ||||||| |||||| |||||| ||||||||||||| || ||||||| ||||||    
T  7931757 aaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 21959698 - 21959730
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    |||||||||||||||||||| ||||||||||||    
T  21959698 aaaataaagtcaatttgtttgcatataagctat 21959730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 29274329 - 29274297
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  29274329 aaaataaagtcaaattgttttcatataagctat 29274297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 10285899 - 10285949
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataaattattttcatgagct 295  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||| ||||    
T  10285899 aaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 29316806 - 29316772
Alignment:
Q  245 aaataagttgaaaagaacttatgaacatgtcataa 279  Q
    ||||||| |||||||||||||||||||||||||||    
T  29316806 aaataagctgaaaagaacttatgaacatgtcataa 29316772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 11513868 - 11513900
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  11513868 aaaataaagtcaaattgttttcatataagctat 11513900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 33944575 - 33944607
Alignment:
Q  196 aaaataaagtcaatttgttttcatataagctat 228  Q
    ||||||||||||| |||||||||||||||||||    
T  33944575 aaaataaagtcaaattgttttcatataagctat 33944607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University