View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_59 (Length: 320)

Name: NF3582_low_59
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_59
NF3582_low_59
[»] chr4 (2 HSPs)
chr4 (2-320)||(28608198-28608517)
chr4 (2-320)||(14177358-14177676)
[»] chr8 (1 HSPs)
chr8 (2-320)||(12934088-12934406)
[»] chr7 (1 HSPs)
chr7 (2-320)||(15299874-15300192)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 320
Target Start/End: Original strand, 28608198 - 28608517
Alignment:
Q  2 catcaaactcccaactgctgaggggtaaggtattgcaaccatagcttctttt-tcatcttgactagtaggacaactcactctactgagtttaaagtgatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28608198 catcaaactcccaactgctgaggagtaaggtattgcaaccatagcttcttttttcatcttgactagtaggacaactcactctgctgagtttaaagtgatt 28608297  T
Q  101 ggctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28608298 ggctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagctttt 28608397  T
Q  201 cggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatctccaatcatat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28608398 cggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatat 28608497  T
Q  301 cctcgtcttgccccactatc 320  Q
    ||||||||||||||||||||    
T  28608498 cctcgtcttgccccactatc 28608517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 14177676 - 14177358
Alignment:
Q  2 catcaaactcccaactgctgaggggtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctactgagtttaaagtgattg 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  14177676 catcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactatgctgagtttaaagtgattg 14177577  T
Q  102 gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14177576 gctaacggtgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc 14177477  T
Q  202 ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatctccaatcatatc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14177476 ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatc 14177377  T
Q  302 ctcgtcttgccccactatc 320  Q
    |||||||||||||||||||    
T  14177376 ctcgtcttgccccactatc 14177358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 12934406 - 12934088
Alignment:
Q  2 catcaaactcccaactgctgaggggtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctactgagtttaaagtgattg 101  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  12934406 catcaaactcccaactgctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgttgagtttaaagtgattg 12934307  T
Q  102 gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12934306 gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc 12934207  T
Q  202 ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatctccaatcatatc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12934206 ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatc 12934107  T
Q  302 ctcgtcttgccccactatc 320  Q
    || ||||||||||||||||    
T  12934106 cttgtcttgccccactatc 12934088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 15300192 - 15299874
Alignment:
Q  2 catcaaactcccaactgctgaggggtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctactgagtttaaagtgattg 101  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15300192 catcaaactcccaactgctgaggagtaaggtatttcagccatagcttgttttttatcttgactagtaggacaacttactctactgagtttaaagtgattg 15300093  T
Q  102 gctaacggcgtgctaactggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttc 201  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |    
T  15300092 gctaacggcgtgctaactagtttagcaccctttatgttgaatctttctagaacccgttccacttactgttgttgtgacaaccatagctttctagatttcc 15299993  T
Q  202 ggtctcgcaaaatcttcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatctccaatcatatc 301  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||    
T  15299992 ggtctcgcaaagtcttcatgcctaagatttgctttgcagggcctagatttttcatgtcgaaggattttgacaattcatttttcaaatcaccaatcatatc 15299893  T
Q  302 ctcgtcttgccccactatc 320  Q
    |||||||||||||||||||    
T  15299892 ctcgtcttgccccactatc 15299874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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