View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_6 (Length: 632)

Name: NF3582_low_6
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_6
NF3582_low_6
[»] chr2 (2 HSPs)
chr2 (21-616)||(32897265-32897860)
chr2 (155-204)||(33761931-33761980)
[»] chr4 (1 HSPs)
chr4 (282-532)||(45058850-45059094)
[»] chr3 (5 HSPs)
chr3 (282-532)||(11462890-11463134)
chr3 (160-193)||(29102185-29102218)
chr3 (61-106)||(54270135-54270180)
chr3 (435-475)||(29103136-29103176)
chr3 (168-204)||(50580854-50580890)
[»] chr6 (2 HSPs)
chr6 (436-513)||(3893374-3893451)
chr6 (277-513)||(10317623-10317859)
[»] chr7 (4 HSPs)
chr7 (277-513)||(32991039-32991281)
chr7 (436-514)||(2919446-2919524)
chr7 (433-469)||(25851231-25851267)
chr7 (433-469)||(25852093-25852129)
[»] chr5 (1 HSPs)
chr5 (63-100)||(8449721-8449758)


Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 21 - 616
Target Start/End: Original strand, 32897265 - 32897860
Alignment:
Q  21 aacatgaacaacaacagtaataacaacagtgatgcacatttaccacctggttttcgtttccacccaactgatgaagaactcattacattctaccttctca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32897265 aacatgaacaacaacagtaataacaacagtgatgcacatttaccacctggttttcgtttccacccaactgatgaagaactcatcacattctaccttctca 32897364  T
Q  121 aaaaagttcttgacactactttcactgcaagagccatagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggtaactaattatcaattat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897365 aaaaagttcttgacaccactttcactgcaagagccatagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggtaactaattatcaattat 32897464  T
Q  221 ttttctttatgaatccatataaagttaaattttctaacactttgtttggtttttaacagagaaagctaagatgggtgagaaagaatggtacttcttcagt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897465 ttttctttatgaatccatataaagttaaattttctaacactttgtttggtttttaacagagaaagctaagatgggtgagaaagaatggtacttcttcagt 32897564  T
Q  321 ctgcgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaa 420  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897565 ctacgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctggttattggaaagcaactgggaaagatagagagatttatagctcaa 32897664  T
Q  421 aaacttactctcttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgcct 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897665 aaacttactctcttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaatatcgcct 32897764  T
Q  521 tgaaggaaaatttgcttatcacttcctctctagaaactctaaggtactaatttttctttcatttcttcatcatagctattttaatttagtgaattt 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897765 tgaaggaaaatttgcttatcacttcctctctagaaactctaaggtactaatttttctttcatttcttcatcatagctattttaatttagtgaattt 32897860  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 33761931 - 33761980
Alignment:
Q  155 catagctgaagttgatctcaacaagtgtgaaccatgggagctaccaggta 204  Q
    ||||||||||||||||||| |||| | ||| |||||||||||||||||||    
T  33761931 catagctgaagttgatctctacaaatttgatccatgggagctaccaggta 33761980  T

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Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 282 - 532
Target Start/End: Original strand, 45058850 - 45059094
Alignment:
Q  282 aaagctaagatgggtgagaaagaatggtacttcttcagtctgcgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctggttatt 381  Q
    ||||| || ||||| || |||||||||||||| ||| || || | |||||||| ||||||||||| ||| | ||||| |||||||||||||| |||||||    
T  45058850 aaagcaaaaatgggagaaaaagaatggtactttttctgtgtgagagacagaaaatatccaactgggttgaggacaaacagagcaacagaagcaggttatt 45058949  T
Q  382 ggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaa 481  Q
    ||||||||||||||||||||| ||| ||||     || |||    | ||  | ||||||||||||||||| ||||||||||| | ||||||||| |||||    
T  45058950 ggaaagcaactgggaaagataaagaaattt-----tc-aaagggaaatcgttggttggtatgaagaaaactcttgttttctacaaaggaagagcacctaa 45059043  T
Q  482 aggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaatt 532  Q
    ||| ||||||||||| ||||| |||||||||||||| ||||| || |||||    
T  45059044 aggagaaaaaagtaattgggtcatgcatgaatatcgacttgagggtaaatt 45059094  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 282 - 532
Target Start/End: Complemental strand, 11463134 - 11462890
Alignment:
Q  282 aaagctaagatgggtgagaaagaatggtacttcttcagtctgcgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctggttatt 381  Q
    ||||| || |||||||| ||||| |||||||| ||  || || | || | |||||| |||||||||||| | || |||||||| || |||||||| ||||    
T  11463134 aaagccaaaatgggtgaaaaagagtggtactttttttgtatgagagataaaaagtacccaactggtttgaggactaatagagctactgaagctggatatt 11463035  T
Q  382 ggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaacccttgttttctatagaggaagagctcctaa 481  Q
    |||| ||||| || |||||||  |||||||| ||   ||||      | ||||||||| ||||||||||| ||||||||||| | ||||||||| |||||    
T  11463034 ggaaggcaacaggaaaagataaggagatttacagaggaaaa------tatcttgttggaatgaagaaaactcttgttttctacaaaggaagagcacctaa 11462941  T
Q  482 aggtgaaaaaagtaactgggttatgcatgaatatcgccttgaaggaaaatt 532  Q
    ||| || |||||||| ||||| |||||||||||| | ||||| || |||||    
T  11462940 aggagagaaaagtaattgggtaatgcatgaatatagacttgagggtaaatt 11462890  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 29102185 - 29102218
Alignment:
Q  160 ctgaagttgatctcaacaagtgtgaaccatggga 193  Q
    |||||||||||||| |||||||||||||||||||    
T  29102185 ctgaagttgatctctacaagtgtgaaccatggga 29102218  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 54270180 - 54270135
Alignment:
Q  61 taccacctggttttcgtttccacccaactgatgaagaactcattac 106  Q
    |||||||||||||  | || ||||||||||||||||||||||||||    
T  54270180 taccacctggtttcaggtttcacccaactgatgaagaactcattac 54270135  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 475
Target Start/End: Original strand, 29103136 - 29103176
Alignment:
Q  435 gttggtatgaagaaaacccttgttttctatagaggaagagc 475  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  29103136 gttggaatgaagaaaaccctagtttactatagaggaagagc 29103176  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 50580890 - 50580854
Alignment:
Q  168 gatctcaacaagtgtgaaccatgggagctaccaggta 204  Q
    ||||||||||| | |||||||||||||||||||||||    
T  50580890 gatctcaacaaatctgaaccatgggagctaccaggta 50580854  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 436 - 513
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
Q  436 ttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat 513  Q
    |||| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||  || ||||| ||||||||||    
T  3893374 ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat 3893451  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 277 - 513
Target Start/End: Complemental strand, 10317859 - 10317623
Alignment:
Q  277 cagagaaagctaagatgggtgagaaagaatggtacttcttcagtctgcgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctgg 376  Q
    ||||||||||||||||| | |||||||||||||| |||||  |||   | || || ||||||||||||||     | || ||||||||||| ||| | ||    
T  10317859 cagagaaagctaagatgagagagaaagaatggtatttcttttgtcaaagagataggaagtatccaactggaacaagaactaatagagcaactgaatcagg 10317760  T
Q  377 ttattggaaagcaactgggaaagatagagagatttatagctcaaaaacttactctcttgttggtatgaagaaaacccttgttttctatagaggaagagct 476  Q
     ||||||||||||||||| ||||||| |||||| || |     |||| | ||   |||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  10317759 ctattggaaagcaactggaaaagataaagagatctacaaagggaaaagtaaccaacttgttggtatgaagaaaactcttgtgttctataaaggtagagct 10317660  T
Q  477 cctaaaggtgaaaaaagtaactgggttatgcatgaat 513  Q
    || | ||| || ||||  || ||||| ||||||||||    
T  10317659 ccaagaggagagaaaaccaattgggtcatgcatgaat 10317623  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 277 - 513
Target Start/End: Original strand, 32991039 - 32991281
Alignment:
Q  277 cagagaaagctaagatgggtgagaaagaatggtacttcttcagtctgcgtgacagaaagtatccaactggtttgcgtacaaatagagcaacagaagctgg 376  Q
    |||||||||| |||||||| ||||||||||||||||| ||  ||| |   || ||||| |||||||| ||| || | |||||||||||||| ||| ||||    
T  32991039 cagagaaagcaaagatgggagagaaagaatggtactttttttgtcagaaagatagaaaatatccaacaggtatgagaacaaatagagcaactgaatctgg 32991138  T
Q  377 ttattggaaagcaactgggaaagatagagagatttatagctcaaa---aacttactct-----cttgttggtatgaagaaaacccttgttttctatagag 468  Q
    ||| |||||||| || || ||||| | ||||||||||  | ||||   ||   | ||      ||||||||||||||||| || ||||| ||||||| ||    
T  32991139 ttactggaaagctacaggaaaagacaaagagatttat--cacaaaggaaaaggaatccaaaaccttgttggtatgaagaagactcttgtgttctataaag 32991236  T
Q  469 gaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaat 513  Q
    |||||||||| ||||| || || | ||| ||||||||||||||||    
T  32991237 gaagagctccaaaaggagagaagactaattgggttatgcatgaat 32991281  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 436 - 514
Target Start/End: Original strand, 2919446 - 2919524
Alignment:
Q  436 ttggtatgaagaaaacccttgttttctatagaggaagagctcctaaaggtgaaaaaagtaactgggttatgcatgaata 514  Q
    |||| ||||| ||||| || |||||||| | |||||||||||| | ||||||||||   |||||||| |||||||||||    
T  2919446 ttgggatgaaaaaaacactagttttctacataggaagagctccgagaggtgaaaaatccaactgggtcatgcatgaata 2919524  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 469
Target Start/End: Original strand, 25851231 - 25851267
Alignment:
Q  433 ttgttggtatgaagaaaacccttgttttctatagagg 469  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  25851231 ttgttggtatgaagaaaactcttgttttctacagagg 25851267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 25852129 - 25852093
Alignment:
Q  433 ttgttggtatgaagaaaacccttgttttctatagagg 469  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  25852129 ttgttggtatgaagaaaactcttgttttctacagagg 25852093  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 8449721 - 8449758
Alignment:
Q  63 ccacctggttttcgtttccacccaactgatgaagaact 100  Q
    ||||| || |||||||||||||||||||||||||||||    
T  8449721 ccaccagggtttcgtttccacccaactgatgaagaact 8449758  T

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