View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_65 (Length: 306)

Name: NF3582_low_65
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_65
NF3582_low_65
[»] chr3 (1 HSPs)
chr3 (1-291)||(55271641-55271938)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 55271938 - 55271641
Alignment:
Q  1 tatctatctatctatctaatctct-------tttttattcaacaatattcatactctctttctcatttcattctccatattaattcttaattcttaattc 93  Q
    ||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55271938 tatctatctatctatctaatctctgtttttttttttattcaacaatatttatactctctttctcatttcattctccaaattaattcttaattcttaattc 55271839  T
Q  94 atagacatttggacaacaaatttggtgtcctctttgtaagcaaggacagctcaaagacactcacaatctcatctactgcactcgttgtaaacttcaacta 193  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55271838 atagacatttggagaacaaatttggtgtcctctttgtaagcaaggacagctcaaagacactcacaatctcatctactgcactcgttgtaaacttcaacta 55271739  T
Q  194 accaaagccgacgaggtacttgcatttctcacttattcatttaattgttcactgcattttatcaattctatttttatactttcacacgtaaatacaca 291  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55271738 accaaagctgacgaggtacttgcatttctcacttattcatttaattgttcactgcattttatcaattctatttttatactttcacacgtaaatacaca 55271641  T

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