View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_68 (Length: 295)
Name: NF3582_low_68
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 3215510 - 3215774
Alignment:
| Q |
13 |
aatatagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215510 |
aatatagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcag |
3215609 |
T |
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| Q |
113 |
tgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215610 |
tgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcacc |
3215709 |
T |
|
| Q |
213 |
agtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaactt |
277 |
Q |
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| T |
3215710 |
agtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaactt |
3215774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 3207586 - 3207836
Alignment:
| Q |
25 |
gatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaac |
124 |
Q |
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| T |
3207586 |
gatggataattaagctgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataattcaaac |
3207685 |
T |
|
| Q |
125 |
cacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaataa |
224 |
Q |
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| T |
3207686 |
cacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcatttgcttttgaagggttgacatgtccagcaccagtggcaaatac |
3207785 |
T |
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| Q |
225 |
atcagctggtttaagtctttggtccaaaatagcttttccttgaagattaac |
275 |
Q |
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|||||||||| || ||||||||||||||||| || |||||||||||||| |
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| T |
3207786 |
atcagctggtagaattctttggtccaaaataggcttaccttgaagattaac |
3207836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 3201603 - 3201843
Alignment:
| Q |
16 |
atagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgt |
115 |
Q |
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||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||| ||||||| | |
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| T |
3201603 |
atagaaattgatgggtaattaagttgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtat |
3201702 |
T |
|
| Q |
116 |
aattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| |
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| T |
3201703 |
aattcaaaccacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcgtttgcttttgaagggttaacatgtccagcaccagt |
3201802 |
T |
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| Q |
216 |
ggcaaataaatcagctggtttaagtctttggtccaaaatag |
256 |
Q |
| |
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| T |
3201803 |
ggcaaatacatcagctggtagaagcctttggtccaaaatag |
3201843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 274
Target Start/End: Original strand, 3219101 - 3219277
Alignment:
| Q |
98 |
caacatgtctatcagtgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggtt |
197 |
Q |
| |
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|||| ||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
3219101 |
caacttgtatatcagtataattcaaaccacccaagtaaggaacaatgtcatttggttcaatgtcataaacaagtcctggatcgtttgctttcaaatggtt |
3219200 |
T |
|
| Q |
198 |
gacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtccaaaatagcttttccttgaagattaa |
274 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
3219201 |
gacatatccagcaccagtggcaaataaatcagctggtttaagcctttggtctaaaatagcttttccttgaagattaa |
3219277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 3220537 - 3220647
Alignment:
| Q |
120 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
219 |
Q |
| |
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||||||||||| |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3220537 |
caaaccacacagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3220636 |
T |
|
| Q |
220 |
aataaatcagc |
230 |
Q |
| |
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|| | |||||| |
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| T |
3220637 |
aaaatatcagc |
3220647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 3179271 - 3179135
Alignment:
| Q |
120 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
219 |
Q |
| |
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||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3179271 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3179172 |
T |
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| Q |
220 |
aataaatcagctggtttaagtctttggtccaaaatag |
256 |
Q |
| |
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|| | |||||| ||| ||||||||| ||||| |||| |
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| T |
3179171 |
aaaacatcagcaggtgaaagtctttgatccaatatag |
3179135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 256
Target Start/End: Original strand, 3239569 - 3239705
Alignment:
| Q |
120 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
219 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3239569 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3239668 |
T |
|
| Q |
220 |
aataaatcagctggtttaagtctttggtccaaaatag |
256 |
Q |
| |
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|| | |||||| ||| ||||||||| ||||| |||| |
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| T |
3239669 |
aaaacatcagcaggtgaaagtctttgatccaatatag |
3239705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 3230770 - 3230865
Alignment:
| Q |
120 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
215 |
Q |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| |||| || |||||||| |||||||| |
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| T |
3230770 |
caaaccacaaagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaaaaggattaacatgtcctgcaccagt |
3230865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 3225522 - 3225617
Alignment:
| Q |
120 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
215 |
Q |
| |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| |
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| T |
3225522 |
caaaccacatagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagt |
3225617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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