View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_69 (Length: 294)
Name: NF3582_low_69
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_69 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 72 - 283
Target Start/End: Original strand, 498458 - 498669
Alignment:
| Q |
72 |
tgccagtgtccgtgttgtgtccggtgtttgtgttcgtacttcataggttattatttagtaatataaatagtgaggtgggtgaattgcagcggtatgcaag |
171 |
Q |
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| T |
498458 |
tgccattgtccgtgtggtgtccggtgtttgtgttcgtgcttcataggttatgatttagtagtataaatagtgagttgggtgaattgcagcggtatgcaag |
498557 |
T |
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| Q |
172 |
aatattgttgaaaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaagg |
271 |
Q |
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| T |
498558 |
aatattgttgaaaccattatgattaggcacagagagagttttctccatctccgaggagattggctcggggatagtttgggattcactctcttctgcaagg |
498657 |
T |
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| Q |
272 |
ttatattcttcg |
283 |
Q |
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| T |
498658 |
ttattttcttcg |
498669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 498089 - 498125
Alignment:
| Q |
20 |
cagggaaagtgatgagactaacttggcaaactttgct |
56 |
Q |
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| T |
498089 |
cagggaaagtgatgagactaacttggcaaactttgct |
498125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 8221906 - 8221960
Alignment:
| Q |
183 |
aaccattatgattaggcacagagagagttttctccatctccgaggagattggctc |
237 |
Q |
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| T |
8221906 |
aaccattatgattaggcaaataaagagttttcttcttctacgaggagattggctc |
8221960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 34084134 - 34084236
Alignment:
| Q |
164 |
tatgcaagaatattgttgaaaccattatgattaggcacagagagagttttctccatctccgaggagattggct-cggggatagtttgggattcactctct |
262 |
Q |
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| T |
34084134 |
tatgcaagaatattggctgaaccattatggttaggcagagagaaagttttctccatctatgaggaacttggctcctggggtagattgggattcactccct |
34084233 |
T |
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| Q |
263 |
tct |
265 |
Q |
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| T |
34084234 |
tct |
34084236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 26411415 - 26411286
Alignment:
| Q |
128 |
agtaatataaatagtgaggtgggtgaattgcagc-ggtatgcaagaatattgttgaaaccattatgattaggcacagagagagttttctccatctccgag |
226 |
Q |
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| T |
26411415 |
agtagtataaataatgaggtaggtgaatggtagtaggtatacaagaatattgtgggaaccattatggttaggcatagaaagagtgttctctttctttgag |
26411316 |
T |
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| Q |
227 |
gagattggctcggggatagtttgggattca |
256 |
Q |
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| T |
26411315 |
gagctttgctctggggtagtttggaattca |
26411286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 56914 - 56864
Alignment:
| Q |
75 |
cagtgtccgtgttgtgtccggtgtttgtgttcgtacttcataggttattat |
125 |
Q |
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| T |
56914 |
cagtgtgcgtgttgtgtctagtgtttgtgtccgtgcttcataggttattat |
56864 |
T |
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