View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_7 (Length: 625)
Name: NF3582_low_7
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 20 - 612
Target Start/End: Complemental strand, 37762815 - 37762223
Alignment:
| Q |
20 |
tatctctctcaaatatttggctgtttctttcaaccaagctgtaggggcaaccacacctttcttcactgctgtttttgcttatttagctacttttaagaga |
119 |
Q |
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| T |
37762815 |
tatctctctcaaatatttggctgtttctttcaaccaagctgtaggggcaaccacacctttcttcactgctgtttttgcttatttagctacttttaagaga |
37762716 |
T |
|
| Q |
120 |
gaggcttggatcacatatgttgctcttgttcctgttgttgctggtgttgccattgcaagtggggtatgnnnnnnngtttgatttgatggaattatacgct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37762715 |
gaggcttggatcacatatgttgctcttgttcctgttgttgctggtgttgccattgcaagtggggtatgtttttttgtttgatttgatggaattatacgct |
37762616 |
T |
|
| Q |
220 |
caatacatttgatttattataattgcttataatataggtgtattgattggtacatgtttatgagtgaatgaaattatacatagatgttttagttcagatt |
319 |
Q |
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| T |
37762615 |
caatacatttgatttattataattgcttataatataggtgtattgattggtacatgtttatgagtgaatgaaattatacatagatgttttagtttagatt |
37762516 |
T |
|
| Q |
320 |
ttgaaattatggatgttttggcatcacatccataatcccactccagatctggaaatatagttaataagatttcagtttttcaagaactgcaaatctgtga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37762515 |
ttgaaattatggatgttttggcatcacatccataatcccactccagatctggaaatatagttaataagatctcagtttttcaagaactgcaaatctgtga |
37762416 |
T |
|
| Q |
420 |
catttggagttttaattttctggatctgcactcatctggtttattattataatatcatatcatacatcagatagccagattgtttggtatttttataatc |
519 |
Q |
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| T |
37762415 |
catttggagttttaattttctggatctgcactcatctggtttattattataatatcatatcatacagcagatagccagattgtttggtatttttataatc |
37762316 |
T |
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| Q |
520 |
aattagcatttaggtacttaattaattgttatttcatctattcatgtggataacatataaaacctaccataaaaattgtcatgaattaggttc |
612 |
Q |
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| T |
37762315 |
aattagcatttaggtacttaattaattgttatttcatctattcatgtggataacatataaaacctaccataaaaattgtcatgaattaggttc |
37762223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 35016370 - 35016438
Alignment:
| Q |
117 |
agagaggcttggatcacatatgttgctcttgttcctgttgttgctggtgttgccattgcaagtggggta |
185 |
Q |
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|||||||||||| | || ||| |||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
35016370 |
agagaggcttggcttacttatcttgctcttgttcctgttgttactggtgttatcattgctagtggggta |
35016438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 5779812 - 5779699
Alignment:
| Q |
72 |
acacctttcttcactgctgtttttgcttatttagctacttttaagagagaggcttggatcacatatgttgctcttgttcctgttgttgctggtgttgcca |
171 |
Q |
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|||||||| ||||| ||||||||||||||| | | | | || |||||||||||| | || |||| | ||||| | ||||||||||||||||||| || |
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| T |
5779812 |
acaccttttttcaccgctgtttttgcttatgttgtgagtagaaaaagagaggcttgggttacttatgctactcttttgcctgttgttgctggtgttgtca |
5779713 |
T |
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| Q |
172 |
ttgcaagtggggta |
185 |
Q |
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|||| ||||||||| |
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| T |
5779712 |
ttgctagtggggta |
5779699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 31330560 - 31330636
Alignment:
| Q |
111 |
tttaagagagaggcttggatcacatatgttgctcttgttcctgttgttgctggtgttgccattgcaagtggggtatg |
187 |
Q |
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|||||||| |||||||| |||| ||| || | ||||||||||||||| ||||||||| ||||| ||||||||||| |
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| T |
31330560 |
tttaagagggaggcttgtctcacttatcttacccttgttcctgttgttactggtgttgttattgctagtggggtatg |
31330636 |
T |
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