View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_70 (Length: 294)

Name: NF3582_low_70

Description: NF3582

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3582_low_70

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 160; E-Value: 3e-85

Query Start/End: Original strand, 106 - 277

Target Start/End: Complemental strand, 27882838 - 27882667

Alignment:

Q	106	ttacaagccactctctatgtccttgaagaccttctttattcaaaaccttaaccgcaactggaagcgatttaagtccaactctaacattctcatcaatgta	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27882838	ttacaagccactctctatgtccttgaagaccttctttattcaaaactttaaccgcaaccggaagcgatttaagtccaactctaacattctcatcaatgta	27882739	T

Q	206	gcctttataaacagtaccaaaccctccttcaccaagaatataatcagcacgaaaacttttcgttatagtttc	277	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27882738	gcctttataaacagtaccaaaccctccttcaccaagaatataatcagcacgaaaactcttcgttatagtttc	27882667	T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 176 - 243

Target Start/End: Original strand, 51939323 - 51939390

Alignment:

Q	176	aagtccaactctaacattctcatcaatgtagcctttataaacagtaccaaaccctccttcaccaagaa	243	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51939323	aagtccagctctaaccttatcatcaatgaaacctttatgaacaggtccaaatcctccttcaccaagaa	51939390	T

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