View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_71 (Length: 288)
Name: NF3582_low_71
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 2121628 - 2121886
Alignment:
| Q |
13 |
atcatttataaatggcgagatgattgaattggatggtgaccatgacaatgggatccatttaattatgacccaataagtgcaacacctcattcacactgat |
112 |
Q |
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| T |
2121628 |
atcatttatagatggagagatgattgaattggatggtgaccatgacaatgagatccatttaattatgactcaataagtgcaacacctcattcacaccgat |
2121727 |
T |
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| Q |
113 |
gtcataagtatatttatttaatattcacgtcatttcattagagtttcttttaatccagacaatgaattccaacctagaacaccttttacataaattctcc |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
2121728 |
gtcataagtata-ttatttaatattcacgtcatttcattagagtttcttttaacccagacaatggattcaaacctagaacaccttttacacaaattctcc |
2121826 |
T |
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| Q |
213 |
ggcctcttcc--aacaactgacaacaataccatctgttgaagatataaaacactccattc |
270 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2121827 |
ggcctcttccaaaacaactgacaacaataccatctgtcgaagatataaaacactccattc |
2121886 |
T |
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