View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_73 (Length: 285)
Name: NF3582_low_73
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 18340224 - 18340488
Alignment:
| Q |
1 |
tctaagagagcagaagctagaagacgtcgtgcagcggagatgagtgatggggaagcacgttgggttggtttggaagagatgaaacggttatggaagacac |
100 |
Q |
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| T |
18340224 |
tctaagagcgcagaagctagaagacgtctggcagcggagatgagtgatggtgaggcacgttgggttggtttggaagagatgaaacggttatggaagacac |
18340323 |
T |
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| Q |
101 |
cgcccggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaattttt-cccataaaggagcaaagg |
199 |
Q |
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| T |
18340324 |
cgccaggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggtgaagaatttttccccataaaggagcaaagg |
18340423 |
T |
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| Q |
200 |
tgaggttggtgttggtgaggaagaggaaagcgattttagg-tttagggtttgtgagggtggataa |
263 |
Q |
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| T |
18340424 |
tgaggttggtgttggtgaggaagaggaaagcgattttaggttttagggtttgtgagggtggataa |
18340488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 18345382 - 18345639
Alignment:
| Q |
1 |
tctaagagagcagaagctagaagacgtcgtgcagcggagatgagtgatggggaagcacgttgggttggtttggaagagatgaaacggttatggaagacac |
100 |
Q |
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| T |
18345382 |
tctaagagggcagatgctaggagacggcgggcagcagcgatgagtgatggagagtaacgtttggtgggtttggaagggatgaaacggttttggaagacac |
18345481 |
T |
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| Q |
101 |
cgcccggggagacgacggaggtggtggggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaatttttcccataaaggagcaaaggt |
200 |
Q |
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| T |
18345482 |
cgccgggggaggcgacataggtggtgggatctgcatggacgtagatgttgaagaggtggttgtttccaacgaagaatttttcccataaaggagcgaaggt |
18345581 |
T |
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| Q |
201 |
gaggttggtgttggtgaggaagaggaaagcgattttaggtttagggtttgtgagggtg |
258 |
Q |
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| T |
18345582 |
gaggttagagttggtgaggaagaggaaagcgattttgggtttgggttttatgagggtg |
18345639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 18303352 - 18303222
Alignment:
| Q |
127 |
gggtctgcatggatgtatatattgaagagatggttgtttccggcgaagaatttttcccataaaggagcaaaggtgaggttggtgttggtgaggaagagga |
226 |
Q |
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| T |
18303352 |
gggtctgcgtggatgtagatgttgaagaggtggttgtttccagtaaagaatatttcccacaaaggagcaaaggtgaagttggtgtttgtgaggaagagga |
18303253 |
T |
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| Q |
227 |
aagcgattttaggtttagggtttgtgagggt |
257 |
Q |
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| T |
18303252 |
aggcgattttgggtttagggttcttgagggt |
18303222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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