View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_75 (Length: 282)
Name: NF3582_low_75
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5123213 - 5122948
Alignment:
| Q |
1 |
tgtatcattcagtgaaccatcaacaactaattatttcccccnnnnnnncatcttcttcatcaaattcatcatcatcaacatacccacacnnnnnnnn--c |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
5123213 |
tgtatcattcagtgaaccatcaacaactaattatttccccctttttttcatcttcttcatcaaattcatcatcatcaacatacccacaaaaaaaaaaaac |
5123114 |
T |
|
| Q |
99 |
tgaattttttaatcatctaaaaattcattacagaactttcatcatcacatcatcaaacaacacaaacttacttagtactattatttannnnnnnnnnnnn |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5123113 |
tgaattttttaatcatctaaaaattcattacagaactttcatcatcacatcatcaaacaacacaaagttacttagtactattatttaagagagagagaga |
5123014 |
T |
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| Q |
199 |
nnacaacacacacatctcatatcaatctctctatcttctctcggctcacactacttatctctttct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5123013 |
gagcaacacacacatctcatatcaatctctctatcttctctcggctcacactacttatctctttct |
5122948 |
T |
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Back To:
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 10977407 - 10977468
Alignment:
| Q |
108 |
taatcatctaaaaattcattacagaac-tttcatcatcacatcatcaaacaacacaaactta |
168 |
Q |
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|||||||||||| |||||||||| ||| |||||||||| |||||||| |||||||||||||| |
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| T |
10977407 |
taatcatctaaagattcattacacaacctttcatcatcccatcatcacacaacacaaactta |
10977468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 9473007 - 9473068
Alignment:
| Q |
108 |
taatcatctaaaaattcattacagaac-tttcatcatcacatcatcaaacaacacaaactta |
168 |
Q |
| |
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|||||||||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||| |
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| T |
9473007 |
taatcatctaaagattcattacacaacctttcatcatcccatcatctcacaacacaaactta |
9473068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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