View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_76 (Length: 281)
Name: NF3582_low_76
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 1932323 - 1932458
Alignment:
| Q |
48 |
ttttagcacgggtttgttgctagtattttaatgtccaaaacccatggactagtgcgtacgttatgctctttaatttttcttgagttgattatatattgtt |
147 |
Q |
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| T |
1932323 |
ttttagcacgggtttgttgctagtattttaatgtccagaacccatggactagtgcgtacgttatgctctttaatttttcttcagttgat--tatattgtt |
1932420 |
T |
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| Q |
148 |
agatgaattagttaagcatatatgataacttcaatcac |
185 |
Q |
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| T |
1932421 |
agatgatttagttaagcatatatgataacttcaatcac |
1932458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 1932495 - 1932543
Alignment:
| Q |
222 |
tcattagattattgttttct-gcaagtcgcaccacacagtgtggcccac |
269 |
Q |
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| T |
1932495 |
tcattagattattgttttctcgcaagtcgcaccacacagtgtggtccac |
1932543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 17500247 - 17500382
Alignment:
| Q |
48 |
ttttagcacgggtttgttgctagtattttaatgtccaaaacccatggactagtgcgtacgttatgctctttaatttttcttgagttgattatatattgtt |
147 |
Q |
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| T |
17500247 |
ttttagcacaggtttgtcgctagtattttaatgtccagaacccatggactagtgcgtacgttatgctctttaaattttattcagttgat--tatattgtt |
17500344 |
T |
|
| Q |
148 |
agatgaattagttaagcatatatgataacttcaatcac |
185 |
Q |
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| T |
17500345 |
agatgatttagttaagcatagatgataacttcaatcac |
17500382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 185
Target Start/End: Complemental strand, 17552967 - 17552832
Alignment:
| Q |
48 |
ttttagcacgggtttgttgctagtattttaatgtccaaaacccatggactagtgcgtacgttatgctctttaatttttcttgagttgattatatattgtt |
147 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
17552967 |
ttttagcacaggtttgtcgctagtattttaatgtccagaacccatggactagtgcgtacgttatgctctttaaattttattcagttgatt--atattgtt |
17552870 |
T |
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| Q |
148 |
agatgaattagttaagcatatatgataacttcaatcac |
185 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |
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| T |
17552869 |
agatgatttagttaagcatagatgataacttcaatcac |
17552832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 17500190 - 17500225
Alignment:
| Q |
11 |
cacagactcattaatgattgtaaatgtgcttcgatg |
46 |
Q |
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| T |
17500190 |
cacagactcattaacgattgtaaatgtgcttcgatg |
17500225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 17553024 - 17552989
Alignment:
| Q |
11 |
cacagactcattaatgattgtaaatgtgcttcgatg |
46 |
Q |
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|
| T |
17553024 |
cacagactcattaacgattgtaaatgtgcttcgatg |
17552989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 265
Target Start/End: Original strand, 17500419 - 17500463
Alignment:
| Q |
222 |
tcattagattattgttttct-gcaagtcgcaccacacagtgtggc |
265 |
Q |
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| T |
17500419 |
tcattagattattgttttctcgcaagtagcaccacacactgtggc |
17500463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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