View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_low_80 (Length: 274)
Name: NF3582_low_80
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_80 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 34429807 - 34430036
Alignment:
| Q |
17 |
tttgatactattctttggcataaatcccctcagccctctggaaatttactttgaggtaacatannnnnnnnnatgtgacaccaaagattcataggtagca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34429807 |
tttgatactattctttggcataaatcccctcagccctctggaaatttactttgaggtaacatatttttttttatgtgacaccaaagattcataggtagca |
34429906 |
T |
|
| Q |
117 |
tgaattttatttaatttatttaatnnnnnnnnnnnnnn-tcaagcatttgatagggaatggaatccctgattagagtttcaaacttgtgagttgtgaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34429907 |
tgaattttatttaatttatttaataaaaaaaatcaaaaatcaagcatttgatagggaatggaatccctgattagagtttcaaacttgtgagttgtgaatt |
34430006 |
T |
|
| Q |
216 |
ttgagttttttatattgtattcaagataca |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34430007 |
ttgagttttttatattgtattcaagataca |
34430036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University