View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_81 (Length: 271)
Name: NF3582_low_81
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6988979 - 6988747
Alignment:
| Q |
1 |
cagtttaagttttcaacatactccattgatttgtctaaaaatattgttgatttaaaggaaaagatgtaaaataaataaggatatgttgtgtttttgtttg |
100 |
Q |
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| T |
6988979 |
cagtttatgttttcaacatactccattgatttgtctaaaaatattgttgatttaaaagaaaagatgtaaaataaataaggatacgttgtg-ttttgtttg |
6988881 |
T |
|
| Q |
101 |
ttttcacttttcattgtatattagactactagttagtcgatttcannnnnnnnnnnnnaaataaaaacattctaatagttaaactaaatatatgtacctt |
200 |
Q |
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| T |
6988880 |
ttttcacttttcattgtatactagattactagttagtcgatttca---tttttaaaaaaaataaaaacattctaatagttaaactaaacatatgtacctt |
6988784 |
T |
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| Q |
201 |
tattattttaaattaatatag-tttctaccaaaaataa |
237 |
Q |
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| T |
6988783 |
tatta-tttaaattaatatagttttctaccaaaaataa |
6988747 |
T |
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