View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_9 (Length: 619)

Name: NF3582_low_9
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_9
NF3582_low_9
[»] chr6 (26 HSPs)
chr6 (19-186)||(26651180-26651355)
chr6 (19-186)||(26757148-26757323)
chr6 (308-520)||(27421097-27421309)
chr6 (425-606)||(31289890-31290071)
chr6 (307-508)||(26652098-26652298)
chr6 (307-508)||(26758066-26758266)
chr6 (196-308)||(26651937-26652049)
chr6 (196-308)||(26757905-26758017)
chr6 (19-186)||(26966174-26966350)
chr6 (189-289)||(26632565-26632665)
chr6 (189-289)||(26738541-26738641)
chr6 (207-302)||(31289644-31289739)
chr6 (192-308)||(27421358-27421474)
chr6 (385-531)||(26632715-26632861)
chr6 (385-531)||(26738691-26738837)
chr6 (19-186)||(26631530-26631706)
chr6 (19-186)||(26737505-26737681)
chr6 (19-83)||(27422504-27422568)
chr6 (308-398)||(31289794-31289885)
chr6 (19-83)||(27714117-27714181)
chr6 (20-80)||(27652256-27652316)
chr6 (19-83)||(27702350-27702414)
chr6 (137-185)||(27422453-27422501)
chr6 (38-83)||(31289405-31289450)
chr6 (19-83)||(26628082-26628146)
chr6 (19-83)||(26734059-26734123)
[»] scaffold0003 (4 HSPs)
scaffold0003 (308-520)||(66054-66266)
scaffold0003 (192-308)||(65889-66005)
scaffold0003 (19-83)||(64795-64859)
scaffold0003 (137-185)||(64862-64910)
[»] scaffold0349 (1 HSPs)
scaffold0349 (19-83)||(17763-17827)
[»] chr8 (1 HSPs)
chr8 (19-84)||(29270009-29270074)
[»] chr4 (1 HSPs)
chr4 (137-174)||(18674281-18674318)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26651180 - 26651355
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------ttgaaagggaagtgaataatcctatgctt 112  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      | ||||||| ||||| |||| ||||||||    
T  26651180 agtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctt 26651279  T
Q  113 tgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattggaatccttatagaaagag 186  Q
    |||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26651280 tgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattggaatccttatagaaagag 26651355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26757148 - 26757323
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt------ttgaaagggaagtgaataatcctatgctt 112  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||      | ||||||| ||||| |||| ||||||||    
T  26757148 agtcacctgtctatgtgcattgtcatgcgatatgtctagagatttctcgcaccacagaatctgttggttgttcgaaagggcagtgagtaatgctatgctt 26757247  T
Q  113 tgagctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattggaatccttatagaaagag 186  Q
    |||||| |||||  |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26757248 tgagcttagttatactggttgcagatttttgagaatttcaatttcagtacacaaattggaatccttatagaaagag 26757323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 308 - 520
Target Start/End: Complemental strand, 27421309 - 27421097
Alignment:
Q  308 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 407  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  27421309 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 27421210  T
Q  408 cgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatc 507  Q
    | || | | |||||||||| |||| || ||||||||| |   |    |||||||| || |||  |||||||||||| |||| ||||||||||||| ||||    
T  27421209 cacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatc 27421110  T
Q  508 cttggtttctgca 520  Q
    | |||||||||||    
T  27421109 cctggtttctgca 27421097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 425 - 606
Target Start/End: Original strand, 31289890 - 31290071
Alignment:
Q  425 tcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatccttggtttctgcagcct 524  Q
    ||||||| || |||||||| |||| | || ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |  |||||||| | |    
T  31289890 tcgatcccggtcaaatgtttgcagttccactcactgacgcagtggtggaaacatcacaacacccgaccttcagcttcaatatccctaatttctgcatcgt 31289989  T
Q  525 aatctttaatcccggaggcgatgaatgttgatttcgttctctggcggagatttccagcaattgctgtcacactttttctcct 606  Q
    ||||||| ||||||  || ||||| || ||||||||||| ||||||| ||||||| | ||||||||||||||||||||||||    
T  31289990 aatctttgatcccgtcggtgatgagtgctgatttcgttccctggcggcgatttccggaaattgctgtcacactttttctcct 31290071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 307 - 508
Target Start/End: Original strand, 26652098 - 26652298
Alignment:
Q  307 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 406  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26652098 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26652196  T
Q  407 acgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtat 506  Q
    | | | | | ||||||||| ||||   | ||||||||||||| | |  ||| ||||||| |||  |||||||||||  |||| ||||||||||||| |||    
T  26652197 atgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatat 26652296  T
Q  507 cc 508  Q
    ||    
T  26652297 cc 26652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 307 - 508
Target Start/End: Original strand, 26758066 - 26758266
Alignment:
Q  307 ttcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttg 406  Q
    ||||||||| | ||||| ||||| |||||||||| | ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  26758066 ttcacatcattgccaaaaaaaat-gtgtttggtttgggactcttacaagatagacttcataaccggctcgattgtgaggattccctatggacattccttg 26758164  T
Q  407 acgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtat 506  Q
    | | | | | ||||||||| ||||   | ||||||||||||| | |  ||| ||||||| |||  |||||||||||  |||| ||||||||||||| |||    
T  26758165 atgtgatccctcaaacttttgatctcagtcaaatgttcgcagttccgctcaatgacgcattggcagaaacatcacatcacccgaccttcagcttcaatat 26758264  T
Q  507 cc 508  Q
    ||    
T  26758265 cc 26758266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 26651937 - 26652049
Alignment:
Q  196 gtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 295  Q
    |||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26651937 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26652036  T
Q  296 aaatttgagtttt 308  Q
    | ||||| |||||    
T  26652037 atatttgcgtttt 26652049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 26757905 - 26758017
Alignment:
Q  196 gtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatg 295  Q
    |||| ||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||    
T  26757905 gtggcaaatttacagctgcagaaacctgtattggatgttgataaatggttgccagagagtgcaacagattctcggtgaaaggatgttatgaagatctgtg 26758004  T
Q  296 aaatttgagtttt 308  Q
    | ||||| |||||    
T  26758005 atatttgcgtttt 26758017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26966174 - 26966350
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgt------tttgaaagggaagtgaataatcctatgc-t 111  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||      || ||||||| || ||||||| |||  | |    
T  26966174 agtcatctggctatttgcactgtcatgcgacatgtctagagattgcttgcaccacagaatccgttggttgttcgaaagggcagcgaataatgctacactt 26966273  T
Q  112 ttgagctcag--ttactggtttcagatttttgagaatttcaatctcagtacacaaattggaatccttatagaaagag 186  Q
    || | |||||  ||||||||| |||| |||  ||||||||||||| |||||| ||||||||||||||||||||||||    
T  26966274 ttcatctcagttttactggttgcagagtttgaagaatttcaatcttagtacaaaaattggaatccttatagaaagag 26966350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 26632565 - 26632665
Alignment:
Q  189 cataatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 288  Q
    ||||||||||||||||||||  |||||||||||||||||  | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26632565 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26632664  T
Q  289 a 289  Q
    |    
T  26632665 a 26632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 26738541 - 26738641
Alignment:
Q  189 cataatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaag 288  Q
    ||||||||||||||||||||  |||||||||||||||||  | |||||||||||||| || ||||| | ||||||||||||||||||||||||| |||||    
T  26738541 cataatggtggaaaatttactcctgaagcaacctgtatcaaaggttgttaaatggtttccggagagggaaacagattctcggtgaaaggatgttatcaag 26738640  T
Q  289 a 289  Q
    |    
T  26738641 a 26738641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 31289644 - 31289739
Alignment:
Q  207 acagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatctatgaaatttg 302  Q
    ||||||| |||||||||||  |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||| |||||    
T  31289644 acagctgcagcaacctgtactggatgttgataaatggttgccagagagtgcaacatattctcggtgaaaggttgttatcaagatctgtgatatttg 31289739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 27421474 - 27421358
Alignment:
Q  192 aatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 291  Q
    |||||||||||||||| ||||| || |||||||||| ||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  27421474 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 27421375  T
Q  292 tatgaaatttgagtttt 308  Q
    | ||||||||| |||||    
T  27421374 tgtgaaatttgcgtttt 27421358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 531
Target Start/End: Original strand, 26632715 - 26632861
Alignment:
Q  385 gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaa 484  Q
    |||| ||||||||||||||||||| |  | | | |||| ||  |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||     
T  26632715 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26632814  T
Q  485 acccaaccttcagcttcagtatccttggtttctgcagcctaatcttt 531  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||    
T  26632815 acccgaccttcagcttcagtatccctggtatctgcatcctaatcttt 26632861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 385 - 531
Target Start/End: Original strand, 26738691 - 26738837
Alignment:
Q  385 gattccctatggacattccttgacgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaa 484  Q
    |||| ||||||||||||||||||| |  | | | |||| ||  |||| || ||||| |||| || | | |||||||| |||||||||||||||||||||     
T  26738691 gatttcctatggacattccttgacccaatcccttaaacatttcatcccggtcaaatcttcgtagttccgttcactgatgcagtggtggaaacatcacaac 26738790  T
Q  485 acccaaccttcagcttcagtatccttggtttctgcagcctaatcttt 531  Q
    |||| ||||||||||||||||||| |||| |||||| ||||||||||    
T  26738791 acccgaccttcagcttcagtatccctggtatctgcatcctaatcttt 26738837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26631530 - 26631706
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt---tg----aaagggaagtgaataatcctatgct 111  Q
    ||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||   ||    |||||| ||||| |||| |||||||    
T  26631530 agtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgct 26631628  T
Q  112 ttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattggaatccttatagaaagag 186  Q
    | | ||||||||||  |||||| |||| |||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  26631629 tcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattggaatccgtatagaaagag 26631706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26737505 - 26737681
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt---tg----aaagggaagtgaataatcctatgct 111  Q
    ||||||||||| |  ||||||||| | | |||||||||||| ||||||||| | ||||||||||||   ||    |||||| ||||| |||| |||||||    
T  26737505 agtcatctggccacttgcattgtcct-caacatgtctagaggttgctcgcagcacagaatccgtttacttgttccaaagggcagtgagtaatgctatgct 26737603  T
Q  112 ttg-agctcagtta--ctggtttcagatttttgagaatttcaatctcagtacacaaattggaatccttatagaaagag 186  Q
    | | ||||||||||  |||||| |||| |||||||||||||||| | ||||||||||||||||||| |||||||||||    
T  26737604 tcgcagctcagttatactggttgcagagttttgagaatttcaatattagtacacaaattggaatccgtatagaaagag 26737681  T

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Target: chr6; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27422568 - 27422504
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  27422568 agtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 27422504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 31289794 - 31289885
Alignment:
Q  308 tcacatcagtcccaaacaaa-attgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggac 398  Q
    |||||||||| ||||| ||| | ||||||| ||  |||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  31289794 tcacatcagtgccaaaaaaagaatgtgtttagtatgagacttttacgagatagacttcctaaccggctcgattgtgaggattccctatggac 31289885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27714181 - 27714117
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  27714181 agtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 27714117  T

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Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 27652316 - 27652256
Alignment:
Q  20 gtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatcc 80  Q
    ||||||||||||| |||||||||||| || ||||||||| |||||||||||| || |||||    
T  27652316 gtcatctggctatttgcattgtcatgtgatatgtctagacattgctcgcaccacaaaatcc 27652256  T

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Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 27702414 - 27702350
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||  || | |||||||||||    
T  27702414 agtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcacagaatccgtt 27702350  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 27422501 - 27422453
Alignment:
Q  137 ttttgagaatttcaatctcagtacacaaattggaatccttatagaaaga 185  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||||||    
T  27422501 ttttgagaatttcaatcttagtacacaaacttgaatccgtatagaaaga 27422453  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 31289405 - 31289450
Alignment:
Q  38 ttgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||||||||| | ||||||||| | |||||||||||    
T  31289405 ttgtcatgcgacatgtctagtggttgctcgcagcacagaatccgtt 31289450  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 26628082 - 26628146
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26628082 agtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26628146  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 26734059 - 26734123
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||| | ||||||||||||| | |||||||||| ||||| ||||  || ||||||||    
T  26734059 agtcatctggctctctgcattgtcatgcaagatgtctagaggttgcttgcacaacaaaatccgtt 26734123  T

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Target: scaffold0003 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 308 - 520
Target Start/End: Original strand, 66054 - 66266
Alignment:
Q  308 tcacatcagtcccaaacaaaattgtgtttggttggagactcttccaagatagacttcctaaccggatcgattgtgaggattccctatggacattccttga 407  Q
    |||||||||| | ||| ||| |||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  66054 tcacatcagtgctaaaaaaagttgtgtatggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctatggacattccttga 66153  T
Q  408 cgcggttcttcaaactttcgatccaggccaaatgttcgcagattcattcactgacgcagtggtggaaacatcacaaaacccaaccttcagcttcagtatc 507  Q
    | || | | |||||||||| |||| || ||||||||| |   |    |||||||| || |||  |||||||||||| |||| ||||||||||||| ||||    
T  66154 cacgatccctcaaactttcaatcccggtcaaatgttcacctttctgctcactgacacaatggcagaaacatcacaacacccgaccttcagcttcaatatc 66253  T
Q  508 cttggtttctgca 520  Q
    | |||||||||||    
T  66254 cctggtttctgca 66266  T

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Target: scaffold0003; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 65889 - 66005
Alignment:
Q  192 aatggtggaaaatttacagctgaagcaacctgtatcggatgttgttaaatggttgccagagagtgcaacagattctcggtgaaaggatgttgtcaagatc 291  Q
    |||||||||||||||| ||||| || |||||||||| ||| ||||||||| |||||| |||||| || ||||||||| | ||||||||||| |||||| |    
T  65889 aatggtggaaaatttatagctgcaggaacctgtatcagattttgttaaattgttgccggagagtacagcagattctcagagaaaggatgttatcaagagc 65988  T
Q  292 tatgaaatttgagtttt 308  Q
    | ||||||||| |||||    
T  65989 tgtgaaatttgcgtttt 66005  T

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Target: scaffold0003; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 64795 - 64859
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  64795 agtcatctggctatttgcattgtcatgcgacatgtctagagattgctcgcagcatagaatccgtt 64859  T

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Target: scaffold0003; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 64862 - 64910
Alignment:
Q  137 ttttgagaatttcaatctcagtacacaaattggaatccttatagaaaga 185  Q
    |||||||||||||||||| |||||||||| | |||||| ||||||||||    
T  64862 ttttgagaatttcaatcttagtacacaaacttgaatccgtatagaaaga 64910  T

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Target: scaffold0349 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 17763 - 17827
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgtt 83  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  17763 agtcatctggctatttgcattgtcatgcgacaagtctagaggttgcttacagcgcagaatccgtt 17827  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 29270074 - 29270009
Alignment:
Q  19 agtcatctggctatgtgcattgtcatgcgacatgtctagagattgctcgcaccgcagaatccgttt 84  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||| || | || |||||||||    
T  29270074 agtcatctggctatttgcattgtcatgcgacaagtctagaggttgctcacagcacataatccgttt 29270009  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 18674318 - 18674281
Alignment:
Q  137 ttttgagaatttcaatctcagtacacaaattggaatcc 174  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  18674318 ttttgagaatttcaatcttagtagacaaattggaatcc 18674281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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