View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_low_98 (Length: 251)

Name: NF3582_low_98
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_low_98
NF3582_low_98
[»] chr1 (20 HSPs)
chr1 (104-233)||(5473028-5473157)
chr1 (3-39)||(24649862-24649898)
chr1 (1-36)||(41999813-41999848)
chr1 (1-35)||(26685855-26685889)
chr1 (1-39)||(46616544-46616582)
chr1 (3-40)||(5961407-5961444)
chr1 (3-40)||(23994842-23994879)
chr1 (1-38)||(27983736-27983773)
chr1 (1-37)||(4068832-4068868)
chr1 (1-37)||(6327696-6327732)
chr1 (1-37)||(10928064-10928100)
chr1 (1-37)||(23984752-23984788)
chr1 (1-37)||(24245174-24245210)
chr1 (1-37)||(25058685-25058721)
chr1 (1-33)||(25518815-25518847)
chr1 (1-37)||(26277174-26277210)
chr1 (1-37)||(33073208-33073244)
chr1 (1-37)||(38332008-38332044)
chr1 (1-37)||(44661967-44662003)
chr1 (1-37)||(48373501-48373537)
[»] chr2 (9 HSPs)
chr2 (1-39)||(17600830-17600868)
chr2 (1-35)||(44481826-44481860)
chr2 (1-37)||(6594607-6594643)
chr2 (1-37)||(12814610-12814646)
chr2 (1-37)||(26710341-26710377)
chr2 (1-37)||(27400399-27400435)
chr2 (1-37)||(32608376-32608412)
chr2 (1-37)||(39103043-39103079)
chr2 (1-37)||(40735460-40735496)
[»] chr3 (21 HSPs)
chr3 (3-40)||(41732522-41732559)
chr3 (1-37)||(25353551-25353587)
chr3 (1-45)||(30251639-30251683)
chr3 (2-37)||(2228074-2228109)
chr3 (1-40)||(29625976-29626015)
chr3 (1-39)||(41464347-41464385)
chr3 (1-39)||(49130573-49130611)
chr3 (1-35)||(52434138-52434172)
chr3 (1-35)||(53115446-53115480)
chr3 (1-35)||(55379984-55380018)
chr3 (4-37)||(21597289-21597322)
chr3 (1-38)||(43125827-43125864)
chr3 (1-37)||(5560181-5560217)
chr3 (1-37)||(24100280-24100316)
chr3 (1-37)||(32234546-32234582)
chr3 (1-37)||(37313396-37313432)
chr3 (1-37)||(40131108-40131144)
chr3 (1-33)||(41882129-41882161)
chr3 (1-33)||(46134357-46134389)
chr3 (1-45)||(48546978-48547022)
chr3 (1-37)||(51102527-51102563)
[»] scaffold2003 (1 HSPs)
scaffold2003 (1-37)||(99-135)
[»] chr5 (11 HSPs)
chr5 (1-37)||(36472422-36472458)
chr5 (1-36)||(1402643-1402678)
chr5 (1-36)||(38638048-38638083)
chr5 (1-35)||(2585461-2585495)
chr5 (1-35)||(24167922-24167956)
chr5 (1-35)||(40632498-40632532)
chr5 (1-41)||(6901792-6901832)
chr5 (1-37)||(19295727-19295763)
chr5 (1-37)||(24253379-24253415)
chr5 (1-37)||(25831518-25831554)
chr5 (1-37)||(43326528-43326564)
[»] chr4 (11 HSPs)
chr4 (1-37)||(34835174-34835210)
chr4 (1-35)||(1662397-1662431)
chr4 (1-43)||(23437583-23437625)
chr4 (1-39)||(47344651-47344689)
chr4 (1-38)||(29478356-29478393)
chr4 (1-38)||(41702608-41702645)
chr4 (1-37)||(3293161-3293197)
chr4 (1-33)||(27580120-27580152)
chr4 (1-37)||(41632155-41632191)
chr4 (1-37)||(51363004-51363040)
chr4 (1-37)||(54805767-54805803)
[»] chr8 (7 HSPs)
chr8 (1-36)||(31149028-31149063)
chr8 (1-37)||(5946044-5946080)
chr8 (1-37)||(10378306-10378342)
chr8 (1-37)||(26196454-26196490)
chr8 (1-37)||(32984226-32984262)
chr8 (1-37)||(37419937-37419973)
chr8 (1-37)||(41653892-41653928)
[»] chr7 (10 HSPs)
chr7 (1-36)||(16482921-16482956)
chr7 (1-39)||(46913105-46913143)
chr7 (1-38)||(47740480-47740517)
chr7 (3-39)||(19563443-19563479)
chr7 (1-37)||(22979796-22979832)
chr7 (1-37)||(33332787-33332823)
chr7 (3-39)||(33695972-33696008)
chr7 (1-37)||(44003508-44003544)
chr7 (1-37)||(45063504-45063540)
chr7 (1-37)||(48609826-48609862)
[»] chr6 (6 HSPs)
chr6 (1-36)||(7167580-7167615)
chr6 (1-38)||(1970707-1970744)
chr6 (1-38)||(8615236-8615273)
chr6 (1-38)||(16703362-16703399)
chr6 (1-37)||(11743093-11743129)
chr6 (1-37)||(22551210-22551246)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-34)||(20615-20648)
[»] scaffold0684 (1 HSPs)
scaffold0684 (1-37)||(4693-4729)
[»] scaffold0163 (1 HSPs)
scaffold0163 (1-37)||(3389-3425)
[»] scaffold0150 (1 HSPs)
scaffold0150 (1-37)||(14741-14777)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 5473028 - 5473157
Alignment:
Q  104 aattaatggtgcgtgtcgagctgttatcgtcacacgatcatgaggctaagcgggggaaggttgaggaaatcacgtgaatcgtcacaagcttttggataca 203  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5473028 aattaatggtgcgtgtcgagctgttatcgccacacgatcatgaggctaagcgggggaaggttgaggaaattacgtgaatcgtcacaagcttttggataca 5473127  T
Q  204 agatttgaacatacacaaactcttgtaaat 233  Q
    ||||||||||||||||||||||||||||||    
T  5473128 agatttgaacatacacaaactcttgtaaat 5473157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24649862 - 24649898
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24649862 ccaccatttttcaaaggtaatctagaaaaaacctttt 24649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41999848 - 41999813
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  41999848 acccaccatttttcaaaggtaatctagaaaaaacct 41999813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26685889 - 26685855
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  26685889 acccaccatttttcaaaggtaatctagaaaaaacc 26685855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46616582 - 46616544
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  46616582 acccaccattcttcaaaggtaatctagaaaaaacctttt 46616544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 5961407 - 5961444
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttta 40  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  5961407 ccaccatttttcaaaagtaatctagaaaaaacctttta 5961444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 23994879 - 23994842
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttta 40  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  23994879 ccaccattcttcaaaggtaatctagaaaaaacctttta 23994842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27983736 - 27983773
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  27983736 acccaccattcttcaaaggtaatctagaaaaaaccttt 27983773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4068832 - 4068868
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  4068832 acccaccatttttcaaaggtaatctagaaaaagcctt 4068868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6327696 - 6327732
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  6327696 acccaccattcttcaaaggtaatctagaaaaaacctt 6327732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10928100 - 10928064
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  10928100 acccaccatttttcaaaggtaatttagaaaaaacctt 10928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23984788 - 23984752
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  23984788 acccaccattcttcaaaggtaatctagaaaaaacctt 23984752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24245174 - 24245210
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  24245174 acccaccattcttcaaaggtaatctagaaaaaacctt 24245210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25058721 - 25058685
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  25058721 acccaccattcttcaaaggtaatctagaaaaaacctt 25058685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 25518847 - 25518815
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  25518847 acccaccatttttcaaaggtaatctagaaaaaa 25518815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26277210 - 26277174
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  26277210 acccaccattcttcaaaggtaatctagaaaaaacctt 26277174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33073244 - 33073208
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  33073244 acccaccatttttcaaaggtaatttagaaaaaacctt 33073208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38332008 - 38332044
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  38332008 acccaccattcttcaaaggtaatctagaaaaaacctt 38332044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44662003 - 44661967
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  44662003 acccaccattcttcaaaggtaatctagaaaaaacctt 44661967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48373537 - 48373501
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  48373537 acccaccattcttcaaaggtaatctagaaaaaacctt 48373501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17600868 - 17600830
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17600868 acccaccatttttcaaaggtaatctagaaaaaacctttt 17600830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44481860 - 44481826
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  44481860 acccaccatttttcaaaggtaatctagaaaaaacc 44481826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6594607 - 6594643
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  6594607 acccaccattcttcaaaggtaatctagaaaaaacctt 6594643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12814646 - 12814610
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  12814646 acccaccattcttcaaaggtaatctagaaaaaacctt 12814610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26710377 - 26710341
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  26710377 acccaccattcttcaaaggtaatctagaaaaaacctt 26710341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27400435 - 27400399
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  27400435 acccaccattcttcaaaggtaatctagaaaaaacctt 27400399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32608412 - 32608376
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  32608412 acccaccattcttcaaaggtaatctagaaaaaacctt 32608376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39103079 - 39103043
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  39103079 acccaccatttttcaaaggtaatttagaaaaaacctt 39103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40735496 - 40735460
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40735496 acccaccattcttcaaaggtaatctagaaaaaacctt 40735460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 41732559 - 41732522
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttta 40  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41732559 ccaccatttttcaaaggtaatctagaaaaaacctttta 41732522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25353587 - 25353551
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25353587 acccaccatttttcaaaggtaatctagaaaaaacctt 25353551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30251639 - 30251683
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttttaacaat 45  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||    
T  30251639 acccaccatttttcaaaggtagtctagaaaaaaccttttatcaat 30251683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 2228074 - 2228109
Alignment:
Q  2 cccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2228074 cccaccatttttcaaaggtaatctagaaaaaacctt 2228109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29625976 - 29626015
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttta 40  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  29625976 acccaccattcttcaaaggtaatctagaaaaaacctttta 29626015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41464385 - 41464347
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  41464385 acccaccattcttcaaaggtaatctagaaaaaacctttt 41464347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49130611 - 49130573
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  49130611 acccaccatttttcaaaggtaatttagaaaaaacctttt 49130573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52434172 - 52434138
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  52434172 acccaccatttttcaaaggtaatctagaaaaaacc 52434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 53115480 - 53115446
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  53115480 acccaccatttttcaaaggtaatctagaaaaaacc 53115446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 55380018 - 55379984
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  55380018 acccaccatttttcaaaggtaatctagaaaaaacc 55379984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 21597289 - 21597322
Alignment:
Q  4 caccatttttcaatggtaatctagaaaaaacctt 37  Q
    ||||||||||||| ||||||||||||||||||||    
T  21597289 caccatttttcaaaggtaatctagaaaaaacctt 21597322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43125864 - 43125827
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  43125864 acccaccattcttcaaaggtaatctagaaaaaaccttt 43125827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5560181 - 5560217
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  5560181 acccaccattcttcaaaggtaatctagaaaaaacctt 5560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24100316 - 24100280
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  24100316 acccaccattcttcaaaggtaatctagaaaaaacctt 24100280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32234546 - 32234582
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  32234546 acccaccattcttcaaaggtaatctagaaaaaacctt 32234582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37313432 - 37313396
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  37313432 acccaccattcttcaaaggtaatctagaaaaaacctt 37313396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40131108 - 40131144
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  40131108 acccaccattcttcaaaggtaatctagaaaaaacctt 40131144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41882129 - 41882161
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  41882129 acccaccatttttcaaaggtaatctagaaaaaa 41882161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46134389 - 46134357
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  46134389 acccaccatttttcaaaggtaatctagaaaaaa 46134357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48546978 - 48547022
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttttaacaat 45  Q
    |||||||||| ||||| | |||||||||||||||||||| |||||    
T  48546978 acccaccattcttcaaagataatctagaaaaaacctttttacaat 48547022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51102527 - 51102563
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  51102527 acccaccattcttcaaaggtaatctagaaaaaacctt 51102563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 135 - 99
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  135 acccaccatttttcaaaggtaatctagaaaaaacctt 99  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36472422 - 36472458
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  36472422 acccaccatttttcaaaggtaatctagaaaaaacctt 36472458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1402643 - 1402678
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  1402643 acccaccatttttcaaaggtaatctagaaaaaacct 1402678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 38638048 - 38638083
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  38638048 acccaccatttttcaaaggtaatctagaaaaaacct 38638083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2585495 - 2585461
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  2585495 acccaccatttttcaaaggtaatctagaaaaaacc 2585461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24167922 - 24167956
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  24167922 acccaccatttttcaaaggtaatctagaaaaaacc 24167956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40632532 - 40632498
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  40632532 acccaccatttttcaaaggtaatctagaaaaaacc 40632498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6901832 - 6901792
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttttaa 41  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  6901832 acccaccattcttcaaagataatctagaaaaaaccttttaa 6901792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19295763 - 19295727
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  19295763 acccaccatttttcaaaggtaatttagaaaaaacctt 19295727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24253415 - 24253379
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  24253415 acccaccattcttcaaaggtaatctagaaaaaacctt 24253379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25831554 - 25831518
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  25831554 acccaccattcttcaaaggtaatctagaaaaaacctt 25831518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43326528 - 43326564
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  43326528 acccaccattcttcaaaggtaatctagaaaaaacctt 43326564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34835210 - 34835174
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34835210 acccaccatttttcaaaggtaatctagaaaaaacctt 34835174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1662397 - 1662431
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacc 35  Q
    |||||||||||||||| ||||||||||||||||||    
T  1662397 acccaccatttttcaaaggtaatctagaaaaaacc 1662431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23437625 - 23437583
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttttaaca 43  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||    
T  23437625 acccaccattcttcaaaggtaatctagaaaaaacctattaaca 23437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47344689 - 47344651
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  47344689 acccaccattcttcaaaggtaatctagaaaaaacctttt 47344651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29478393 - 29478356
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  29478393 acccaccattcttcaaaggtaatctagaaaaaaccttt 29478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41702608 - 41702645
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  41702608 acccaccattcttcaaaggtaatctagaaaaaaccttt 41702645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3293161 - 3293197
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  3293161 acccaccatttttcaaaggtaatttagaaaaaacctt 3293197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27580152 - 27580120
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaa 33  Q
    |||||||||||||||| ||||||||||||||||    
T  27580152 acccaccatttttcaaaggtaatctagaaaaaa 27580120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41632155 - 41632191
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  41632155 acccaccattcttcaaaggtaatctagaaaaaacctt 41632191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51363040 - 51363004
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  51363040 acccaccattcttcaaaggtaatctagaaaaaacctt 51363004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54805767 - 54805803
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  54805767 acccaccattcttcaaaggtaatctagaaaaaacctt 54805803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31149028 - 31149063
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  31149028 acccaccatttttcaaaggtaatctagaaaaaacct 31149063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5946080 - 5946044
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  5946080 acccaccattcttcaaaggtaatctagaaaaaacctt 5946044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10378342 - 10378306
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  10378342 acccaccatttttcaaaggtaatttagaaaaaacctt 10378306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26196454 - 26196490
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  26196454 acccaccatttttcaaaggtaatctaaaaaaaacctt 26196490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32984226 - 32984262
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  32984226 acccaccattcttcaaaggtaatctagaaaaaacctt 32984262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37419973 - 37419937
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  37419973 acccaccattcttcaaaggtaatctagaaaaaacctt 37419937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41653928 - 41653892
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  41653928 acccaccattcttcaaaggtaatctagaaaaaacctt 41653892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 16482921 - 16482956
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  16482921 acccaccatttttcaaaggtaatctagaaaaaacct 16482956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46913143 - 46913105
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  46913143 acccaccattcttcaaaggtaatctagaaaaaacctttt 46913105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47740480 - 47740517
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  47740480 acccaccattcttcaaaggtaatctagaaaaaaccttt 47740517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 19563479 - 19563443
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  19563479 ccaccattcttcaaaggtaatctagaaaaaacctttt 19563443  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22979796 - 22979832
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  22979796 acccaccattcttcaaaggtaatctagaaaaaacctt 22979832  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33332823 - 33332787
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  33332823 acccaccattcttcaaaggtaatctagaaaaaacctt 33332787  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 33695972 - 33696008
Alignment:
Q  3 ccaccatttttcaatggtaatctagaaaaaacctttt 39  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  33695972 ccaccattcttcaaaggtaatctagaaaaaacctttt 33696008  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44003508 - 44003544
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| |||||| |||||||||||||    
T  44003508 acccaccatttttcaaaggtaatttagaaaaaacctt 44003544  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45063504 - 45063540
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  45063504 acccaccattcttcaaaggtaatctagaaaaaacctt 45063540  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48609826 - 48609862
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  48609826 acccaccattcttcaaaggtaatctagaaaaaacctt 48609862  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7167615 - 7167580
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  7167615 acccaccatttttcaaaggtaatctagaaaaaacct 7167580  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1970744 - 1970707
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  1970744 acccaccattcttcaaaggtaatctagaaaaaaccttt 1970707  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8615273 - 8615236
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8615273 acccaccattcttcaaaggtaatctagaaaaaaccttt 8615236  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16703399 - 16703362
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaaccttt 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  16703399 acccaccattcttcaaaggtaatctagaaaaaaccttt 16703362  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11743093 - 11743129
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  11743093 acccaccattcttcaagggtaatctagaaaaaacctt 11743129  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22551210 - 22551246
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  22551210 acccaccattcttcaaaggtaatctagaaaaaacctt 22551246  T

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Target: scaffold0125 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20615 - 20648
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaac 34  Q
    |||||||||||||||| |||||||||||||||||    
T  20615 acccaccatttttcaaaggtaatctagaaaaaac 20648  T

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Target: scaffold0684 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4693 - 4729
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    ||||||||||||| || ||||||||||||||||||||    
T  4693 acccaccatttttgaaaggtaatctagaaaaaacctt 4729  T

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Target: scaffold0163 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3425 - 3389
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    ||||||||||||| || ||||||||||||||||||||    
T  3425 acccaccatttttgaaaggtaatctagaaaaaacctt 3389  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14777 - 14741
Alignment:
Q  1 acccaccatttttcaatggtaatctagaaaaaacctt 37  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  14777 acccaccatttttcaaaggtaatctagacaaaacctt 14741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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