View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3583_low_1 (Length: 240)
Name: NF3583_low_1
Description: NF3583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3583_low_1 |
 | |
|
| [»] chr7 (11 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 2690981 - 2690760
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2690981 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagctgccgttttaggataaccgagaagattatccgaggctaggttattgataacaaagc |
2690882 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2690881 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataaag |
2690782 |
T |
|
| Q |
219 |
gaaaagaaattttactaacaaa |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2690781 |
gaaaagaaattttactaacaaa |
2690760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2099698 - 2099919
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
2099698 |
ttaatgccatcccatgaacaacaatctgtgctggagttccaagatgctgtttttggataaccgagaagattatcagaggctaagttattgatgacaaagc |
2099797 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| | || || |||||||| | |
|
|
| T |
2099798 |
cttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaatgtgaaagtgaaaagtgaatacag |
2099897 |
T |
|
| Q |
219 |
gaaaagaaattttactaacaaa |
240 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
2099898 |
gaaaagaaattttagtaacaaa |
2099919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2126958 - 2127179
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| ||||||| ||||||||| ||||||| |
|
|
| T |
2126958 |
ttaatgccatcccatgagcaacaatctgtgctggaattccaagatgatgttttaggataaccaagaagatcatcagaggctaagttattgatgacaaagc |
2127057 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| | || || |||||||| | |
|
|
| T |
2127058 |
cttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaatgtgaaagtgaaaagtgaatacag |
2127157 |
T |
|
| Q |
219 |
gaaaagaaattttactaacaaa |
240 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
2127158 |
gaaaagaaattttagtaacaaa |
2127179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2139564 - 2139785
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| | || ||||| ||||||| |
|
|
| T |
2139564 |
ttaatgccatcccatgagcagcaatctgtgctggaattccatgatgctgttttaggataaccaagaagcttatcagaggcaatcttgttgatgacaaagc |
2139663 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||| ||||||| | ||| || ||||||||| | |
|
|
| T |
2139664 |
cttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggtaaagatgtagtaaatgtgaaagagaaaagtgaataaag |
2139763 |
T |
|
| Q |
219 |
gaaaagaaattttactaacaaa |
240 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
2139764 |
gaaaagaaattttacaaacaaa |
2139785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 2136332 - 2136508
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| ||||||| ||||||||| ||||||| |
|
|
| T |
2136332 |
ttaatgccatcccatgagcagcaatctgtgctggaattccaagatgatgttttaggataaccaagaagatcatcagaggctaagttattgatgacaaagc |
2136431 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||| ||||||| |
|
|
| T |
2136432 |
cttccttaaattgcaacaaggcatggctttcatattgatgacattttggctgaatttgaggtaaacatgtagtaaat |
2136508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 2073978 - 2074192
Alignment:
| Q |
26 |
catcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagccttcctt |
125 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
2073978 |
catcccatgagcaacaatctgtgctggaattccaagatgatgttttaggataaccaagaagatcatcagaggctaagttattgatgacaaagccttcctt |
2074077 |
T |
|
| Q |
126 |
aaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatggaaaaga |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||| | ||| || ||||||||| | |||||| |
|
|
| T |
2074078 |
aaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacatgtagtaaatgcgaaagagaagagtgaataaagaaaaaga |
2074177 |
T |
|
| Q |
226 |
aattttactaacaaa |
240 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2074178 |
aattttactaacaaa |
2074192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 2066871 - 2067047
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| | | ||||| ||||||| |
|
|
| T |
2066871 |
ttaatgccatcccatgagcaacaatctgtgctggaattccaagatgctgttttaggaaaaccaagaagcttatcagaggcaatcctgttgatgacaaagc |
2066970 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
2066971 |
cttccttaaattgcaacaaggcatggctttcatattgatgacactttggctgaatttgaggaaaacatgtagtaaat |
2067047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 2244806 - 2244587
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| || |||||||| || |||| |||||||| | ||||||| |||||| || ||||||| |
|
|
| T |
2244806 |
ttaatgccatcccatgagcagcaatctgtgctggaattccatgaagctgttttcggataacttagaagatttgctgaggctaagttattaatgacaaagc |
2244707 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaa--taaaagagaaaatagtgaataa |
216 |
Q |
| |
|
||| ||| ||||||||||| || |||||||||||| ||||||||||||||||||||| | ||||||||| |||||| | ||||||||||| ||||||| |
|
|
| T |
2244706 |
cttgctttaattgcaacaaagcttggctttcatattgatgacactttggctgaatttgatgaaaacatgtagtaaatgtgaaagagaaaat--tgaataa |
2244609 |
T |
|
| Q |
217 |
tggaaaagaaattttactaaca |
238 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
2244608 |
aggaatataaattttactaaca |
2244587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 2115068 - 2115277
Alignment:
| Q |
19 |
ttaattccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagc |
118 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |||| | ||||| ||||||||| ||||||| |
|
|
| T |
2115068 |
ttaatgccatcccatgagcagcaatctgtgctggaattccaagatgctatttttggagaaccatg------------ggctaagttattgatgacaaagc |
2115155 |
T |
|
| Q |
119 |
cttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||| | ||| || ||||||||| | |
|
|
| T |
2115156 |
cttccttaaattgcaacaaggcatggctttcatcaccatgacactttggatgaatttgaggaaaacatgtagtaaatgtgaaagagaaaagtgaataaag |
2115255 |
T |
|
| Q |
219 |
gaaaagaaattttactaacaaa |
240 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
2115256 |
gaaaagaaattttagtaacaaa |
2115277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 2058605 - 2058820
Alignment:
| Q |
25 |
ccatcccacgagcagcaatctgtgctggaattccaagatgctgttttagggtaaccgagaagattatccgaggctaggttattgataacaaagccttcct |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |||| | | || |||||| || ||||| ||||||||||| |
|
|
| T |
2058605 |
ccatcccatgagcagcaatctgtgctggaattccaagatgctgctttaggataactgagagggtactcggaggctttcttgttgatgttaaagccttcct |
2058704 |
T |
|
| Q |
125 |
taaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatgcagtaaataaaagagaaaatagtgaataatggaaaag |
224 |
Q |
| |
|
||||||| || || ||||||||||||| |||||||||||||| |||| || |||||||| ||||||| | || || ||||||||| ||||||| |
|
|
| T |
2058705 |
taaattgtaagaaagcatggctttcatcatcatgacactttggcttaattaaagaaaaacatgtagtaaatgtgaaagtgaaaagtgaataaaggaaaag |
2058804 |
T |
|
| Q |
225 |
aaattttactaacaaa |
240 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
2058805 |
aaattttacaaacaaa |
2058820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 1695756 - 1695681
Alignment:
| Q |
112 |
acaaagccttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttcaggaaaacatg |
187 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||| | ||||||||||| |
|
|
| T |
1695756 |
acaaagccttccttaaattgtaacaaggcatggctttcatcttgatgacactttggctgaactaaaggaaaacatg |
1695681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 24031851 - 24031914
Alignment:
| Q |
114 |
aaagccttccttaaattgcaacaaggcatggctttcatatggatgacactttggctgaatttca |
177 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||| ||||| || || |||||||||| |
|
|
| T |
24031851 |
aaagtcttccttaacttgcaacagggcatggctttcatattcatgaccctatgactgaatttca |
24031914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University