View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_1 (Length: 843)
Name: NF3584_high_1
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 825
Target Start/End: Complemental strand, 31548677 - 31547867
Alignment:
| Q |
13 |
agcagagaaggcaagatattcagttatccattatcaatggaaagttctggacgaggaattgacctagcccaaaatggtatatctgttatgatgatgtatt |
112 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31548677 |
agcacagaaggcaagatattcagttatccatcatcaatggaaacttctggacgaggaattgacctagcccaaaatggtatatctgttgtgatgatgtatt |
31548578 |
T |
|
| Q |
113 |
tgaaacttgaaagtataatttttcttatttttctatgattgttttagttatgatcttattaaattggcaactcatgtgactcctattttgtttttaggcc |
212 |
Q |
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| T |
31548577 |
tgaaa-------gtataatttttcttatttttctatgattgttttagttatgatcttattaaattggcaactcgtgtgactcctattttgtttttaggcc |
31548485 |
T |
|
| Q |
213 |
agaagcattcttttaaatttgataaagtttttatacaagacgtatcacaagaagaagtttttgtagaagtttcacagcttgtacaaagtgctcttgatgg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31548484 |
agaagcattcttttaaatttgataaagtttttatacaagacatatcacaagaagaagtgtttgtagaagtttcacagcttgtgcaaagtgctcttgatgg |
31548385 |
T |
|
| Q |
313 |
ttataaggtaagtaaaagttcttctgttgtaagtgttgtatagcatttttcacatttttccttggatttctttggttctgatctatcaatgctacatata |
412 |
Q |
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||||||||||| | |||| ||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31548384 |
ttataaggtaattcaaagctcttctgctgtaagctttgtatatcatttttcacatttttccttggatttctttggttctgatctatcaatgctacatata |
31548285 |
T |
|
| Q |
413 |
aggcacatgtcagttatgctgcaattcaaatatgtatgtttttaaatcaatatgcatacatacacattaaccattggaatttattctgaaatacgatg-t |
511 |
Q |
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|||||| | ||||||||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||| || | | |
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| T |
31548284 |
aggcacgtctcagttatgctgctattcaaatatgcatg----taaatcaatatggatacatacacattaaccatttggatttattctgaaatatgaagtt |
31548189 |
T |
|
| Q |
512 |
tttcattttaggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatccagacgaaaaagggttgat |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31548188 |
tttcattttaggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatcctgacgaaaaagggttgat |
31548089 |
T |
|
| Q |
612 |
acctcgttcattagaacaaatatttcaagcaaaacagtctcagcaacctcaaggctggaaatacgaaatgcaggtaacattcgagtactttcttcttac- |
710 |
Q |
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| T |
31548088 |
acctcgttcgttagaacaaatatttcaagcaaaacagtctcaacaacctcaaggctggaagtacgaaatgcaggtaacatcggagtactttcttcttact |
31547989 |
T |
|
| Q |
711 |
ttacct--tattatttcattttaatgtaaacaattttttgaacat-----gataaggtttctgttataatattttcaggtgtcaatgttggaaatataca |
803 |
Q |
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| T |
31547988 |
ttacctcatattattgcattgtaatgtaaacaattttttgaacatgaccagagaaggtttttgttataaaattttcaggtgtcaatgttggaaatataca |
31547889 |
T |
|
| Q |
804 |
atgaaaccattcgagatctgtt |
825 |
Q |
| |
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||||||| ||||| |||||||| |
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| T |
31547888 |
atgaaactattcgtgatctgtt |
31547867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 521 - 686
Target Start/End: Original strand, 34651119 - 34651284
Alignment:
| Q |
521 |
aggtttgcatctttgcctatggtcaaacaggatcagggaaaacctatacaatgatgggaagacctggacatccagacgaaaaagggttgatacctcgttc |
620 |
Q |
| |
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|||||||||| || || |||||||| ||||| |||||||||||||||||||||||||| || |||||||||| | ||||| || |||||||||||||| |
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| T |
34651119 |
aggtttgcattttcgcatatggtcagacaggttcagggaaaacctatacaatgatgggcaggcctggacatctcggagaaaagggtttgatacctcgttc |
34651218 |
T |
|
| Q |
621 |
attagaacaaatatttcaagcaaaacagtctcagcaacctcaaggctggaaatacgaaatgcaggt |
686 |
Q |
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| T |
34651219 |
gctagaacaaatatttcaaacaagacagtctcaacaaccgcagggctggaaatatgaaatgcaggt |
34651284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 203 - 323
Target Start/End: Original strand, 34650673 - 34650793
Alignment:
| Q |
203 |
tttttaggccagaagcattcttttaaatttgataaagtttttatacaagacgtatcacaagaagaagtttttgtagaagtttcacagcttgtacaaagtg |
302 |
Q |
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|||||||| || || |||||||| | |||||||| ||||||| || || | || |||||||||||| ||| ||| ||||||| ||||| ||||||| |
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| T |
34650673 |
tttttaggtcaaaaacattctttcacatttgatagagtttttgcacctgatgcattacaagaagaagtatttacggaaatttcacaacttgtgcaaagtg |
34650772 |
T |
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| Q |
303 |
ctcttgatggttataaggtaa |
323 |
Q |
| |
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| T |
34650773 |
ctcttgatggttataaggtaa |
34650793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 774 - 825
Target Start/End: Original strand, 34651370 - 34651421
Alignment:
| Q |
774 |
attttcaggtgtcaatgttggaaatatacaatgaaaccattcgagatctgtt |
825 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
34651370 |
atttacaggtgtcaatgttggaaatatacaatgaaacgattcgtgatttgtt |
34651421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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