View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_11 (Length: 296)
Name: NF3584_high_11
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 27794311 - 27794579
Alignment:
| Q |
18 |
ctattaccatgaatccgatgagaagttataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctca |
117 |
Q |
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| T |
27794311 |
ctattaccatgaatccgatgagaagttataagacgctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctca |
27794410 |
T |
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| Q |
118 |
acctacaacttttccctaataaaattcatgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagata |
217 |
Q |
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| T |
27794411 |
acctacaacttttccctaataaaattcatgacaaaatgagcttatgttataattaatatttacaaattaaacttataaatcaaggaatatgagacagata |
27794510 |
T |
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| Q |
218 |
accttataatgttggattaaataatgtttctcaagaaaatatctttcactatgctggattctccctatg |
286 |
Q |
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| T |
27794511 |
accttataatgttggattaaataatgtttctcaagaaaatatctttcactatgctggattctctctatg |
27794579 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 40752104 - 40752185
Alignment:
| Q |
53 |
ctcttcttcttcctccgtgaaaggatttctgtttattcttgggtccaattgattgaaccatctcaacctacaacttttccct |
134 |
Q |
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| T |
40752104 |
ctcttcttcctcttctgtgaaaggtcttctgttaattcttggatctagctgattgaaccatctcaacctacaacttttccct |
40752185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 18245444 - 18245492
Alignment:
| Q |
79 |
ttctgtttattcttgggtccaattgattgaaccatctcaacctacaact |
127 |
Q |
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| T |
18245444 |
ttctgttgattcttggatccagttggttgaaccatctcagcctacaact |
18245492 |
T |
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