View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3584_high_19 (Length: 253)
Name: NF3584_high_19
Description: NF3584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3584_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3642033 - 3642269
Alignment:
| Q |
1 |
ctcttacaacaacatattaacacatgatagtacaattctaaaaggcatgtaacagaaaatccatctgtatgtcagtctgtgtatggtataagggtatatg |
100 |
Q |
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| T |
3642033 |
ctcttacaacaacatattaacacatgatggtacaattctaaaaggcatgtaacagaaaatccatctgtatgtcagtctgtgtatggtataagggtatatg |
3642132 |
T |
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| Q |
101 |
ctcttgaggcttgtaaacaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccagga |
200 |
Q |
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| T |
3642133 |
ctcttgaggcttgtaaacaaggactgcataattgttatacaagtcgtcaatgacaattcattcaagaatatcatcagtgccaaagttaacatgaccagga |
3642232 |
T |
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| Q |
201 |
tattgatgcgaataaactaaccaaggcagctgaaatt |
237 |
Q |
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| T |
3642233 |
tattgatgcgaataaactaaccaaggcagctgaaatt |
3642269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 10606935 - 10606872
Alignment:
| Q |
171 |
tcatcagtgccaaagttaacatgaccaggatattgatgcgaataaactaaccaaggcagctgaa |
234 |
Q |
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|||||||||||| |||||| | |||| ||||||| || ||||||||||| ||||||||||||| |
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| T |
10606935 |
tcatcagtgccagagttaaaaggacctggatattaattggaataaactaaacaaggcagctgaa |
10606872 |
T |
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